FMO09474.5prime Sequence
1129 bp (1006 high quality bases) assembled on 2010-10-13
> FMO09474.5prime
CAGTCGACATGCGGGTAGTGGCCATGGTCAGTGGCGGCAAGGACAGCTGC
TACAACATGATGCAGTGCGTCGCCGAGGGCCACGAAATCGTCGCCCTGGC
CAATCTGCATCCCAAGGACAGAGACGAACTGGACAGCTTCATGTACCAGA
CGGTCGGCCACATGGGCATCGAGATACTGGCCAGCGCCATGGGATTGCCA
CTATACCGGCGCGAAACCAAGGGCAAGAGCACCCAGACCGGCAAGCAATA
CGTGCCCACCGATGACGACGAGGTCGAGGATCTATACAGTCTGCTGGAGA
CATGCAAGCACGAACTTCAGGTGGATGCGGTGGCCGTGGGCGCCATCCTC
TCGGATTACCAACGCGTGCGTGTGGAGAACGTGTGCAGCCGCCTGAACCT
GATATCCCTGGCCTATCTGTGGAGGAGAGATCAGACTGAATTGCTGCAGG
AGATGATCGACTGCCAGGTGCACGCCATCATCATAAAGGTGGCTGCCCTG
GGCCTCGTGCCGGATCGACACCTGGGCAAATCGCTGCGCGAGATGCAGCC
GCACCTGCTGAAGATGCGCGACAAGTACGGACTGAATGTGTGCGGCGAGG
GTGGCGAGTATGAGACATTCACCCTGGACTGCCCGCTCTTTCGGCAGCGC
ATCGTTGTCGAGGACATCCAGACGATAATCAGCAGTGCCGATCCCATCTG
CCCGGTGGGCTACATCAATTTCACCAAACTGACGCTGCAGCCAAAGGAGG
CGGCGGGCGCGGCCAGCAGCGGCGGCAACGAGGTGGTGTTCGTGAAGCGT
TCACTCGACTATATTAGCGATCTGAACGAATCGACGTACAGCGACCTCAG
TGATCCGGGTTTTCAGTGAAACAGAACTGGAATTAATCGAAAAGGAGACC
AGGCTGCGCGAATCGCTTAGCCAAAGTGAGCTGATATCGCGCAGTAACTC
CTTTGGTCGCCATCTGGCCGCCACCGCCTCCTCGCCGAATACCCATTGTC
ACGAAGAAGCCGTCAGCGTCGACGAGTCCACAAGCGGGCGGGCGGCGCGG
AATACTGGGCGGAGTTTGGAGAACCAACCATCTTGTTCAACCCTCAGCTG
TGCGGTCATGCTGTCTGACAACCACCGCC
FMO09474.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:41:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1578-RB | 4512 | CG1578-RB | 382..1491 | 9..1129 | 5120 | 97.9 | Plus |
| CG1578-RC | 3741 | CG1578-RC | 460..1569 | 9..1129 | 5120 | 97.9 | Plus |
| CG1578-RA | 3667 | CG1578-RA | 386..1495 | 9..1129 | 5120 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:41:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11812064..11812605 | 1032..487 | 2490 | 98.4 | Minus |
| X | 23542271 | X | 11814697..11814883 | 308..122 | 935 | 100 | Minus |
| X | 23542271 | X | 11813286..11813469 | 490..307 | 920 | 100 | Minus |
| X | 23542271 | X | 11815170..11815284 | 123..9 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:41:06 has no hits.
FMO09474.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:53 Download gff for
FMO09474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1578-RA | 360..1476 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:40:17 Download gff for
FMO09474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1578-RA | 379..1495 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:44 Download gff for
FMO09474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1578-RA | 379..1495 | 1..1129 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:44 Download gff for
FMO09474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11811974..11812603 | 489..1129 | 96 | <- | Minus |
| X | 11813288..11813467 | 309..488 | 100 | <- | Minus |
| X | 11814697..11814881 | 124..308 | 100 | <- | Minus |
| X | 11815170..11815291 | 1..123 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:40:17 Download gff for
FMO09474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11706007..11706636 | 489..1129 | 96 | <- | Minus |
| arm_X | 11707321..11707500 | 309..488 | 100 | <- | Minus |
| arm_X | 11708730..11708914 | 124..308 | 100 | <- | Minus |
| arm_X | 11709203..11709324 | 1..123 | 96 | | Minus |
