FMO09475.5prime Sequence
1086 bp (990 high quality bases) assembled on 2010-10-13
> FMO09475.5prime
CAGTCGACATGACAAACTGCCAAAGTTCAGTGTTCATAGTCGTAGGCACC
CTGTTTTCCATCATGGCAGCGGCTCAATCGGCACCCGTTTCCACCACCAC
ACAGGCAGAGATCTACCTGTCCCAGTTCGGCTATCTACCCGCCTCTGCCC
GCAATCCCGCCAGCAGTGGGCTACACGACCAGCGGACCTGGGTGAGTGCC
ATCGAGGAGTTCCAAAGCTTCGCGGGACTGAACATCACCGGCGAGCTGGA
TGCGGAGACAATGAAGCTGATGTCCCTGCCCCGCTGCGGAGTTCGGGATC
GCGTCGGCACCGGTGACAGCCGCTCCAAGCGGTACGCCCTGCAGGGCAGT
CGCTGGCGTGTGAAGAACCTCACCTACAAGATCTCCAAGTACCCCAAGCG
GCTGAAGCGAGTCGATGTCGACGCGGAGATCGGTCGCGCATTTGCCGTGT
GGTCCGAGGACACCGACCTGACCTTCACCAGGAAGACCTCCGGCCCCGTG
CACATCGAGATCAAGTTCGTGGAGAGCGAGCATGGAGACGGCGATGCCTT
TGACGGTCAAGGCGGCACCCTGGCGCATGCCTTCTTCCCTGTCTTTGGCG
GAGATGCCCACTTTGACGACGCGGAACTGTGGACCATTGGCTCTCCTCGA
GGCACCAATCTGTTCCAGGTGGCCGCTCACGAGTTCGGTCACTCCTTGGG
ACTCTCCCACTCAGATCAGAGCTCCGCTCTGATGGCGCCCTTCTATCGCG
GCTTTGAACCCGTCTTCAAGTTGGACGAGGACGACAAGGCGGCCATCCAG
TCACTGTATGGGCGCAAAACAAACCAGCTGAGGCCTACCAACGTGTACCC
GGGCCACCACCCAGCGGCCATACTCTCCTCCAAAGGTGCCACTAGACGAC
TCCATCTGCAAGACTCCAAGGTAGACACACTCTTCACTCGGCGGCAGGCG
AGACCTACGCCTCAAGGGCGACAAATACTACAGCTGACCACGGACTCCGT
GAGAGCTACCCACAGCTCATCTCCAAGGCTACAGATGCGGGCACATCGAT
GCGGCGTCCACTACAAGAACCGCAGACGTACTTTCT
FMO09475.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:41:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mmp1-RL | 3781 | CG4859-RL | 502..1592 | 9..1083 | 4915 | 97.6 | Plus |
| Mmp1-RK | 3325 | CG4859-RK | 511..1601 | 9..1083 | 4915 | 97.6 | Plus |
| Mmp1-RJ | 3790 | CG4859-RJ | 511..1601 | 9..1083 | 4915 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:41:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24675605..24676125 | 1028..515 | 2190 | 97.3 | Minus |
| 2R | 25286936 | 2R | 24676194..24676601 | 516..109 | 2040 | 100 | Minus |
| 2R | 25286936 | 2R | 24682214..24682315 | 110..9 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:41:10 has no hits.
FMO09475.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:54 Download gff for
FMO09475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mmp1-RD | 492..1591 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:40:19 Download gff for
FMO09475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mmp1-RJ | 504..1603 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:47 Download gff for
FMO09475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mmp1-RJ | 504..1603 | 1..1086 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:47 Download gff for
FMO09475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24682214..24682322 | 1..110 | 96 | | Minus |
| 2R | 24676196..24676599 | 111..514 | 100 | <- | Minus |
| 2R | 24675539..24676125 | 515..1086 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:40:19 Download gff for
FMO09475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20563719..20564122 | 111..514 | 100 | <- | Minus |
| arm_2R | 20569737..20569845 | 1..110 | 96 | | Minus |
| arm_2R | 20563062..20563648 | 515..1086 | 95 | <- | Minus |
