FMO09476.5prime Sequence
1116 bp (1008 high quality bases) assembled on 2010-10-13
> FMO09476.5prime
CAGTCGACATGGCAGACTCCGGCAAACACGCGAGTGGTGGTCACAATGGA
GCGAACAGCGAACGCAGAAACGACCAGAACGGACGCAACGGACGCAATGG
ACACAACGGACACAGTCAAGGACGACAGCTGCAGTTCCTGGACAATCCGC
CCCCCAGCCAAGCCACCTTCAATGTGCGCAGTCTGTGGCCAAGCATAAAG
TCTGGTGTTCGCCGCTTGAGGAGCCAGTTGCTCCGGCGGACAGCCACCAC
GGGTCCAGCGATGGCTCCGTCCGGTGGAGCGGACTTACCTCCCTCGGACA
ATGATCGGGCTGCGCCATCCAGAAGCGGTGACGGGAACACGGAAACAGAC
GGCAGTAATCCACATCGAAGGCTGGACGAATCGTCCGTGATGGGCAGTAT
GCAGTCAGTGAAAAATTATATTAAAAGAACACGCCCAGGCCGGAAAAAAA
GAAAAGATGACGAGGACTTCACCTCGTCCGCTGGGTACGATGCAGATGAT
GGGGAGAGGCGTATCATAAACCTAAATGGGCCACAGCCCACTAAGTACGG
TAATAATCGCATAACGACGGCAAAATATAGTTTCATCAGCTTTTTGCCCG
CGTTCCTGTTCGAGCAATTCCGGCGTTACTCCAACTGCTTTTTCCTGCTA
ATTGCCATACTGCAACAAATCCCGGAGGTGTCGCCGACGGGTCGTTACAC
CACGCTAGTGCCACTGATGTTCATCCTGTCGGTGAGCGCCATTAAGGAGA
TAATCGAGGACATTAAACGACATCGGGCGGATAATGAGATCAATCACCGA
TCGATAGAGCGCCTGGATAGTGGCTCGTGGTGCACAGTTCGCTGGTCGGA
GTTGACGGTGGGCGATATCATCAAAGTGGGAATCAATACCTTCTTCCCCG
CCGATCTGATTCTGCTGTCGTCCAGTGAACCGCAGGCCATGTGCTTCATA
AAGACGGTCAATTTGGATGGTGAAACCACCTGAAGAATTCGAACAGGGCC
CTCCCAGCCACCGCTGACTGCTGGAAACGAGGATCTGCACGATGAAGGCA
GATCGAGTGGCGGCTGGCAACGCATTTATACAAGTTAACGGATGCTCAAG
ACTGAGCCACCGCTGC
FMO09476.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:41:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42321-RP | 5080 | CG42321-RP | 420..1518 | 9..1098 | 4990 | 97.7 | Plus |
| CG42321-RO | 4787 | CG42321-RO | 420..1518 | 9..1098 | 4990 | 97.7 | Plus |
| CG42321-RN | 4553 | CG42321-RN | 186..1284 | 9..1098 | 4990 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:41:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13425513..13425960 | 456..9 | 2240 | 100 | Minus |
| 2R | 25286936 | 2R | 13422320..13422505 | 764..579 | 915 | 99.5 | Minus |
| 2R | 25286936 | 2R | 13422099..13422259 | 925..765 | 805 | 100 | Minus |
| 2R | 25286936 | 2R | 13422602..13422727 | 580..455 | 630 | 100 | Minus |
| 2R | 25286936 | 2R | 13421933..13422039 | 1030..923 | 250 | 86.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:41:13 has no hits.
FMO09476.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:55 Download gff for
FMO09476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42321-RO | 419..1464 | 9..1051 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:40:21 Download gff for
FMO09476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42321-RN | 186..1231 | 9..1051 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:48 Download gff for
FMO09476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42321-RN | 186..1231 | 9..1051 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:48 Download gff for
FMO09476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13422099..13422259 | 765..925 | 100 | <- | Minus |
| 2R | 13422320..13422503 | 581..764 | 99 | <- | Minus |
| 2R | 13422602..13422725 | 457..580 | 100 | <- | Minus |
| 2R | 13425513..13425960 | 9..456 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:40:21 Download gff for
FMO09476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9309604..9309764 | 765..925 | 100 | <- | Minus |
| arm_2R | 9309825..9310008 | 581..764 | 99 | <- | Minus |
| arm_2R | 9310107..9310230 | 457..580 | 100 | <- | Minus |
| arm_2R | 9313018..9313465 | 9..456 | 100 | | Minus |
