FMO09479.5prime Sequence
1115 bp (1012 high quality bases) assembled on 2010-10-13
> FMO09479.5prime
CAGTCGACATGCATTGGCTAGTTCTGATACTAGTGCCCCTCGTCTGGGCC
AATAGCAGTGATCTAAAGGGAGCACCTGTGATGACCACAGTAGCCCCGAC
TGGCGGTCATCGAAGTCCCCATCAGCAGCAGAGATTGCAGCAATTGCAGG
AGGCGCAACAACTGGAGGCCCATCAGCAGCACCATCATCATTTGCGGCAC
GAACAGCATCTGCGGGCCGAACTGGAGGGCAACCATCAGCCGCCGATCGA
GGATGTCGAGAAGAAGGCCTTCCTCGATCCCCAATTGCCCATGCAGCAGC
ATCACTTGCGTCATCACAATCGTCATCATGCGAGCTGGGAGCAGCGGGTA
TTTCCCTCGCTGCGTCATCAGCAGCACCGCTTGTCCATCGGACCGAGCAC
GGCCAAGAACCTAATGACCACCGAGGCACCCACAACCAGGCACCATGGCC
TGATCTCCAATCACAGTCGCTATTTTGACAGGGACGGCATCTTTCCATCC
TGGGCTGAGCCTCGAACCACCAGAGGTCCCAATTGGCGACAGGAGGTGGA
CTCGAGTGATTCCGACGAGGACAGCGATGAGGATGACGAAGATGACTACG
ATGAGTATGATGAGGATGGCGATACCTCGAATGGCGTTGATGAGGAACTG
GCCCGACAAATGCCCAGATATTCGCTGTTCACCCAGAAGTTGCCACACAT
CGATTTAAAGGATACCGATTACAATGCGTACGACCAGTCGGATGAACTGG
ACATAGTTTCGAGTAGCAATCGCAACAGCAACAAGTATCCCAGCGTGGCC
AATCCGCACGACAAGTCTGCTGGCAAGCGGATATATTCGATTGGCTGTTC
AAACATGATAGGGAAAAAGAGGCTGTTAAAAAGCCACACATCACAACTAC
TTCACGACACAACAACCTCAACAACCAGCACAGTAAAGCCCACATTATGC
GAACCGAAAGGCCAAACTGCAATTATGATGCGAATCTTAAGAATGGCGGT
GGCGAGAGACGACTCCATGAGATTCCGACTCCGAGTCGATGAGGCTCTCC
AATGACAGTGGAACGATCGAGCCACCACTCCATCTTCAGCAGCGAAACCC
GGAAGAACTACCTGG
FMO09479.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:41:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pvf3-RF | 4852 | CG34378-RF | 1026..2153 | 4..1111 | 4950 | 97.2 | Plus |
| Pvf3-RD | 3387 | CG34378-RD | 1026..2153 | 4..1111 | 4950 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:41:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7155662..7156670 | 1005..4 | 4685 | 99 | Minus |
Blast to na_te.dros performed 2014-11-26 14:41:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2260..2379 | 124..243 | 113 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2451..2521 | 120..190 | 112 | 62 | Plus |
FMO09479.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:56 Download gff for
FMO09479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvf3-RD | 30..1107 | 1..1064 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:40:28 Download gff for
FMO09479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvf3-RD | 1024..2101 | 1..1064 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:53 Download gff for
FMO09479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvf3-RD | 1024..2101 | 1..1064 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:53 Download gff for
FMO09479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7155595..7156672 | 1..1064 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:40:28 Download gff for
FMO09479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7155595..7156672 | 1..1064 | 97 | | Minus |
