FMO09481.5prime Sequence
1153 bp (1035 high quality bases) assembled on 2010-10-13
> FMO09481.5prime
CAGTCGACATGGCGACAGCTGAAATCGACGATTTGATTGAAAAGCTGAAG
ACGACCAGTGTCAGTCCGGCGAACACGACCAACTTGCTCTGCGAGATCTC
GGCGACGAAGGACCCCAAACTTTTCGATAAGCACGAGCTGGCAGAGTGCT
TTCTGGGCCTCACCAAGTGCGACGACACAAACGTGCGCAAGGAGGCGGCC
AAGTGCATTGCGGAGATCACCAAGTCCGAGGTGCAGCGCAAGAAGTTCAC
CAAGAGGAATATAATAGCCGCATTTCTGGAGTGCTTGCGACAAGTGCCCA
CGTCCGACGGCAGTATGGAGCTGCCCATACAGATTTGTCGGGCACTGGGC
AATATCTGCTACCTAAACGACGAAGCCAGGGACTTAATACTCGAGCTGGA
GGGCGATGCTGTTCTACTGCGACTGCTGGACATCACAACCATCGAGGACG
TGGCCAATGCGGCGCAATTCATCAAAGTGCGCGGCGGCTTGCTGTCCAAC
TATTTGCTCGGAGGCGAGGGCTTGGCCAAGCGGGCCATGGAGTTGGGCGT
GATGAAGAAGCTGCAAGGCATCATCGACATTGGCGCCTCCAATGTGGAAC
AGCATGAGGATCTGCTGCTGAACACGCTTCCACTGCTCAGTATACTCACC
GAGAACGTGTCGGATCTGAACTTCGACTCTTCCCTGAATATCCAGCTGTC
TCGCATTCTGGCCGCTTCCACGAATCCCGATCTTGCCGAGATGTGCCTGG
AGCTGCTCCATTACCAGGCGGAGAGCGACGAAGTCAAGCTTATTTTGGCC
AAGGACGGTCTGTGCGAAACCATCTACAACCTGCTGGAAAAGTACAAGAC
TCTGGCCAGCACAAGTGAGGCCAGGGCGTTGATGAAACTCGCCTGCGACT
CATCGTATTATTCCTTACTGGTGATGACTCAATGCACTATTTGTACCCCA
CGCCCGCTGCTGAGAACATGGTCGATTGGCTGGACTCGACGGACATCGAT
CTGCTAACCACCGGCGTGCTGGCCCTGGGCAACTTTGGCGCGCACCGATA
GGCCCTGCATCTACTTTGGTGGGAGCAGCGAACATGAACAGCTGCTCAGT
GGCTGGTAGAAACACGGCCGTCAAAGACGATGTGCGCCTTGCAGAGTTCT
TTC
FMO09481.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vimar-RC | 3470 | CG3572-RC | 293..1427 | 7..1139 | 5245 | 98 | Plus |
| vimar-RB | 3467 | CG3572-RB | 293..1424 | 7..1139 | 5190 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:41:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6977692..6978600 | 923..16 | 4480 | 99.8 | Minus |
| 2R | 25286936 | 2R | 6977459..6977603 | 1068..923 | 540 | 95.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:41:31 has no hits.
FMO09481.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:58 Download gff for
FMO09481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vimar-RC | 284..1438 | 1..1153 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:40:31 Download gff for
FMO09481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vimar-RC | 287..1441 | 1..1153 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:57 Download gff for
FMO09481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vimar-RC | 287..1441 | 1..1153 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:57 Download gff for
FMO09481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6977692..6978600 | 16..923 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:40:31 Download gff for
FMO09481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2865197..2866105 | 16..923 | 99 | | Minus |
