FMO09482.5prime Sequence
1119 bp (1024 high quality bases) assembled on 2010-10-13
> FMO09482.5prime
CAGTCGACATGCCAGAAGCTTGTTGCTTTCTCCACTCCTCTTTCATCCTC
GTCATGTGTTTCTATCTGCAGATCAAGCGCAACATTCTACTGGGCAAGCT
GCCCTGCTCCAGCAACACCCAGTGCCTGCTTGCCAGCTACACTGTGCAAT
CCGAGTTGGGTGACTTTAACGCATTAGAACACCAGCCGGGCTATCTGAGC
GGAATGCAGCTGCTCTGCGACCAGACAACGGAGGCGGAGCGGAAGGTTGG
AGAACTGCACAAGTTGCACCGTGGGCAGCTACCGGCGGACGCGGAGTACA
ACTACCTGGAGCACGCTAAGCGATTGGAGCTATACGGGATTGACCTGCAC
AGGGCCACCGACTCCAACGGCAAGGAGCTGCAGCTGGGCGTATCGGCCGT
CGGACTGCTCGTCTTCCAGCATTCATTGCGCGTGAACACTTTCTCGTGGA
GCAAGATGGTCAAGGTGTCGTTCAAGCGTAAGGACTTCTTCATCCAGTTG
CGCCGCGAGCCCAGCGAGAACTACGATACTTTGCTGGGCTTTGGGATGAG
CAGCCACAAGCACGCCAAGGCGCTGTGGAAGTCCTGCGTGGAGCACCACA
GCTTCTTCCGCCTAAAGCGACCACACCGCCTCTCACGCTTCCTCAATATC
AGTTTGGGTAGCAAGTTTTACTACTCTGGACGCACAGAGCTACAGGCTGT
GCAGGAGTCCAAACAGCGTGGTCGCATTCACAAGGTATTTGTGCGCTCGC
CGAGCAAGCGGCTTCTGGGAGCCGCCGGCGGTGTGGGAACGTCAGGCTCC
TCGGGCGGTACGCCTATGCAGCAGCACAGCGGCTCCGAGAGCGCCATTCC
CACAACAACTGAAAGCCAGCCGGCGCATGAACCATACTGACCATTACAAA
GACAGCCGCCCGCACGATACAAGGTCACCTCCAGGAGCCGATTCCATGCC
GCGCAAGGCGTGGGGAGCAGCAGAGCGACGAGTATGACATTTCAGCTCGA
CGTCGATTTATTGAACAGTGCACCCGACGCTCGAGTCTGCATCCCGTCGC
CATGCCGTCCGCTTACAGCTCGGCAGCCAAGTCCAATTCCTACTTGCAAA
CAACCATGCGGCGACCCCT
FMO09482.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:40:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptpmeg-RK | 4079 | CG1228-RK | 1037..2091 | 60..1107 | 4800 | 97.8 | Plus |
| Ptpmeg-RJ | 4028 | CG1228-RJ | 986..2040 | 60..1107 | 4800 | 97.8 | Plus |
| Ptpmeg-RI | 3596 | CG1228-RI | 865..1919 | 60..1107 | 4800 | 97.8 | Plus |
| Ptpmeg-RK | 4079 | CG1228-RK | 206..256 | 9..59 | 255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:40:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 352838..353682 | 151..991 | 3905 | 98.8 | Plus |
| 3L | 28110227 | 3L | 352681..352771 | 60..150 | 455 | 100 | Plus |
| 3L | 28110227 | 3L | 328302..328352 | 9..59 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:40:52 has no hits.
FMO09482.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:51 Download gff for
FMO09482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptpmeg-RB | 60..1142 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:40:10 Download gff for
FMO09482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptpmeg-RI | 862..1891 | 53..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:36 Download gff for
FMO09482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptpmeg-RI | 862..1891 | 53..1077 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:36 Download gff for
FMO09482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 328297..328352 | 1..59 | 93 | -> | Plus |
| 3L | 352681..352771 | 60..150 | 100 | -> | Plus |
| 3L | 352838..353687 | 151..997 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:40:10 Download gff for
FMO09482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 328297..328352 | 1..59 | 93 | -> | Plus |
| arm_3L | 352681..352771 | 60..150 | 100 | -> | Plus |
| arm_3L | 352838..353687 | 151..997 | 98 | -> | Plus |
