FMO09485.5prime Sequence
1105 bp (989 high quality bases) assembled on 2010-10-13
> FMO09485.5prime
CAGTCGACATGACTGCTAGGATGATCTCAATATGCGGCCTGGTCATGGCT
TTGATGATGGCTTCCGTTTTGGCCAGCTCATCGCGTTTCCAGCGAGTGCC
CCAAAGTCAGTCCGTGGTGGAAAATGAATCCGTGAAATTCGAGTGCGAAT
CGACCGACTCCTACAGTGAACTGCACTACGACTGGTTGCATAATGGTCAT
CGGATTGCGTATGACAAGCGTGTCCATCAAATCGGTTCCAATTTGCATAT
CGAGGCGGTGCGGCGCACGGAGGATGTTGGCAACTATGTTTGCATCGCGA
CAAATTTGGCCAGCGGCGCCAGGGAGGCGTCTCCGCCCGCCAAACTGAGC
GTGATATATCTTGAATCGGCCAGTGTTCAGCTGCTGGGCAGCAATCGCAA
CGAGCTGCTGCTCAAGTGCCACGTGGAGGGCGCCTCAGGAGATTTGGAAC
CGCTAGAGATCGAATGGTATCGCAACAGCGAGAAACTTAGCACCTGGAAG
AACGTCCAGCTGGATCAGCATCGCCTGATAATCCGACAGCCGGGAAGCGA
GGACGATGGCCTGTACCGCTGCACCGCCTCCAATGCGGCGGGTCGAGTGA
TGAGCAAGCAGGGCTATGTCTACCAGTCCAGTGTGAAGTGCCTGCCCCGA
CTTCCTAGGCGCAAGAACGAAAAGATGATGGAGTCCTGGGACAAACAGAC
CTTCCTGTGCCGCGGTAAGCGCGGTGGAGCTGCTGGACTAGAGGCACTAC
CCGCCGCTCCCGAGGATCTGCGCATTGTGCAAGGACCCATTGGTCAGTCG
ATTATCAAGGAGGGTGAGCCCACGGCTTTGACCTGTCTGTATGAACTGCC
CGACGAGCTGAAGAACCAGCGCATTCACTCCGTTGGCGCAAAGATGGCAA
ACTTTTGCGTCAAGTGAACCTGGGTGGCTTCGGCGCCCATTCCAGGTCAC
TCCTTCGATTCCGCAAGATGCTCTTGTGCGTGAGACGCCCGTCTAGTGCT
GCACAAGCAGATGCCACCTAGCCTTGCCAGCATTATTGCAGTGATGCGGG
TCAGTACCATGTCAGTTGCAGCCTAGAAGCTCATGCCCCGAATAATCCCA
TCTCC
FMO09485.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:41:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| otk-RB | 4769 | CG8967-RB | 918..2020 | 9..1105 | 5095 | 98.1 | Plus |
| otk-RA | 4671 | CG8967-RA | 918..2020 | 9..1105 | 5095 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:41:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12005334..12006078 | 1095..358 | 3090 | 97.1 | Minus |
| 2R | 25286936 | 2R | 12013759..12013921 | 357..195 | 815 | 100 | Minus |
| 2R | 25286936 | 2R | 12013988..12014125 | 197..60 | 690 | 100 | Minus |
| 2R | 25286936 | 2R | 12018878..12018929 | 60..9 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:41:45 has no hits.
FMO09485.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:00 Download gff for
FMO09485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| otk-RA | 891..1998 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:40:38 Download gff for
FMO09485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| otk-RA | 913..2020 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:03 Download gff for
FMO09485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| otk-RA | 913..2020 | 1..1105 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:03 Download gff for
FMO09485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12005325..12006078 | 358..1105 | 97 | <- | Minus |
| 2R | 12013759..12013920 | 196..357 | 100 | <- | Minus |
| 2R | 12013990..12014124 | 61..195 | 100 | <- | Minus |
| 2R | 12018878..12018934 | 1..60 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:40:38 Download gff for
FMO09485.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7892830..7893583 | 358..1105 | 97 | <- | Minus |
| arm_2R | 7901264..7901425 | 196..357 | 100 | <- | Minus |
| arm_2R | 7901495..7901629 | 61..195 | 100 | <- | Minus |
| arm_2R | 7906383..7906439 | 1..60 | 93 | | Minus |
