FMO09486.5prime Sequence
1107 bp (992 high quality bases) assembled on 2010-10-13
> FMO09486.5prime
CAGTCGACATGGCGCACCAGCAGCAACAACAACTGGCTCCATCGGTCAAC
TGTTCACTGGACGATATCGATCTGACGGCCCTAAAAGATCCAGCTGGCAT
CTTTGAGCTCATCGAAGTTGTGGGCAATGGCACCTACGGTCAGGTCTACA
AGGGCCGTCACACGAAGACTGGTCAATTGGCTGCCATAAAGGTGATGGAC
GTCACCGAGGACGAAGAGGAGGAGATCAAGCTGGAGATCAATGTGCTAAA
GAAATACTCGAATCACCGCAACATCGCCACCTACTACGGAGCCTTCATCA
AGAAGTCGCCACCTGGGAAGGACGATCAGCTCTGGCTGGTGATGGAGTAC
TGTGGTGCTGGATCGGTAACGGATCTGGTCAAGTCCACCAAGGGTCAGAG
CCTGAAGGAGGAGTGGATCGCCTACATCTGCCGCGAGATTCTGCGGGGCC
TGAGCTACCTGCACTCGAACAAAGTCATCCATCGCGACATCAAGGGGCAG
AATGTGCTCCTCACCGACAACGCCGAGGTGAAGCTGGTGGACTTTGGTGT
CTCCGCCCAGCTGGATCGCACGATAGGACGGCGCAACACATTCATCGGTA
CTCCCTACTGGATGGCCCCCGAGGTCATTGCCTGCGACGAGAATCCCGAC
GCCACGTACGACAATCGCTCCGATCTGTGGTCGCTGGGCATCACCGCTCT
GGAGATGGCTGAGTCACAGCCCCCGCTCTGCGATCTGCATCCGATGCGCG
CCCTCTTCCTGATTCCGCGCAACTCGCCACCCAGGCTCAAATCGAAGAAG
TGGTCCAAGAAGTTTCACGGCTTTATTGACACGGTGCTAGTTAAGGACTA
TCACCAGCGGCCTTACACCGAGAACCTGCTGAAGCACGGCTTCATCAAGA
CCAGCCCACAGATCGCCAGGTGCGCATCCAGCTGACGACCACATCGATCG
CTGCAAGAAGCGCAAGCAGAAAGGGCGCGAGGACTATCGCCTACTCGGCT
CCGACAACGACGACGACGACCCAGCTGGTCGGTGGAGCCAAGCCTCCATT
GTCAGCACCAGCGGCGATACGTGGCCCGCAAACTTCCCAGCAAATCCGGA
AGGTCCC
FMO09486.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:41:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msn-RI | 5643 | CG16973-RI | 332..1436 | 9..1105 | 5010 | 97.8 | Plus |
| msn-RH | 4618 | CG16973-RH | 195..1299 | 9..1105 | 5010 | 97.8 | Plus |
| msn-RG | 4282 | CG16973-RG | 195..1299 | 9..1105 | 5010 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:41:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2567367..2567816 | 600..151 | 2250 | 100 | Minus |
| 3L | 28110227 | 3L | 2567046..2567293 | 840..593 | 1225 | 99.6 | Minus |
| 3L | 28110227 | 3L | 2566746..2566935 | 1023..839 | 620 | 92.1 | Minus |
| 3L | 28110227 | 3L | 2585604..2585682 | 87..9 | 395 | 100 | Minus |
| 3L | 28110227 | 3L | 2579454..2579520 | 153..87 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:41:50 has no hits.
FMO09486.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:00 Download gff for
FMO09486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msn-RB | 186..1290 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:40:41 Download gff for
FMO09486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msn-RG | 186..1290 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:05 Download gff for
FMO09486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msn-RG | 186..1290 | 1..1097 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:05 Download gff for
FMO09486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2567370..2567814 | 153..597 | 100 | <- | Minus |
| 3L | 2579455..2579520 | 87..152 | 100 | <- | Minus |
| 3L | 2585605..2585688 | 1..86 | 95 | | Minus |
| 3L | 2566670..2566933 | 841..1097 | 91 | <- | Minus |
| 3L | 2567046..2567288 | 598..840 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:40:41 Download gff for
FMO09486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2566670..2566933 | 841..1097 | 91 | <- | Minus |
| arm_3L | 2567046..2567288 | 598..840 | 100 | <- | Minus |
| arm_3L | 2567370..2567814 | 153..597 | 100 | <- | Minus |
| arm_3L | 2579455..2579520 | 87..152 | 100 | <- | Minus |
| arm_3L | 2585605..2585688 | 1..86 | 95 | | Minus |
