FMO09487.5prime Sequence
1118 bp (993 high quality bases) assembled on 2010-10-13
> FMO09487.5prime
CAGTCGACATGGGCGAGTTCTTTAAGTCGCTCAACCTCAACTACTTCTCC
TCTAGCGAGGTCAACGGAGCTGCAGGAAACGGAGCACCAGAGGCCCTCGG
TGGCAGGCTGGACAATGACTTCGTGGGCCAGGTCGTTGAAGTCGCTGGAC
ACAGGCTGCGCATCAAGTGTGTCATCGCCGAAGGCGGATACGCCTTCGTG
TATGTAGCCCAAGATGTGCAAACTGGCACAGAATACGCCCTCAAGCGTCT
GATCGGGGCTGACATGCAAGCCTCCACCGCCATCATCAACGAGATCAACA
TCCACAAGCAGCTGTCGGGGCACGAGAACATTGTCGCCTTTGTGGGTTCC
AGTTATACCGCCCCATCAACTCAATTGGGAGCCCAGTACTTGCTCCTCAC
CGAGCTGTGTAAAGGCGGATCTCTGGTGGACTGCTTCAGAACAAACAATG
CTCCATTCAATCCGACTTGTGTTCTGCGCATCTTCTACCAAATGGCGCGG
GCTGTGGCCAGCTTGCACTCACAGTCACCGCCGATAGCCCACCGAGATAT
AAAGATTGAGAACTTTCTCATTGGCAACGACAAACAGATCAAGCTGTGCG
ACTTTGGGTCCGCCAGCACGGAGGTCCTGTCGCCCACGTTTGAGTGGAGC
GCCAACCAGCGCAGCATGCTGGAGGACCAGCTAAACACTGTTACTACTCC
GATGTACCGATCCCCTGAGATGCTCGACACTTGGTCCAACAACCCGATTG
GGCCCAAAGTGGACATATGGGCTCTCGGATGCATTCTCTACTTCCTGTGC
TACCGCAAGCATCCCTACGAGGATGGCGGAAGCTGCGGATCATTAACGCC
CATTACATGCTTCCGCCAGATCCTCAGTACCAGTGCTTCAGCGATATAAT
CCGTGGCTGTTTAAAGTGAACCCGTTCGAGCGCCTGGATATTACTATGGT
GCTGGAGGGCTTTGCAGCCCTCGCTGAGAACCACAATTGGTCGCCTCAAA
GACCTCTAGACTTCAATATGCCAATCGAGTCCTTCCGGCCGAGTCCTCTC
AAAGTTCTGCTTACTCTGGAGGTTTAACGACGCATTCTGCCGCATACAAT
CTACCTTAATGAACCCGC
FMO09487.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:41:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aux-RC | 4276 | CG1107-RC | 158..1263 | 9..1101 | 5030 | 97.8 | Plus |
| aux-RB | 4312 | CG1107-RB | 158..1263 | 9..1101 | 5030 | 97.8 | Plus |
| aux-RA | 4410 | CG1107-RA | 256..1361 | 9..1101 | 5030 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:41:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4222256..4222780 | 553..1068 | 2100 | 96 | Plus |
| 3R | 32079331 | 3R | 4221754..4221987 | 182..415 | 1170 | 100 | Plus |
| 3R | 32079331 | 3R | 4221143..4221318 | 9..184 | 880 | 100 | Plus |
| 3R | 32079331 | 3R | 4222056..4222201 | 413..558 | 715 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:41:53 has no hits.
FMO09487.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:01 Download gff for
FMO09487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aux-RB | 140..1225 | 1..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:40:42 Download gff for
FMO09487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aux-RA | 249..1334 | 1..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:07 Download gff for
FMO09487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aux-RA | 249..1334 | 1..1081 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:07 Download gff for
FMO09487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4222058..4222197 | 415..554 | 100 | -> | Plus |
| 3R | 4221136..4221317 | 1..183 | 97 | -> | Plus |
| 3R | 4221756..4221986 | 184..414 | 100 | -> | Plus |
| 3R | 4222258..4222790 | 555..1081 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:40:42 Download gff for
FMO09487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 46858..47039 | 1..183 | 97 | -> | Plus |
| arm_3R | 47478..47708 | 184..414 | 100 | -> | Plus |
| arm_3R | 47780..47919 | 415..554 | 100 | -> | Plus |
| arm_3R | 47980..48512 | 555..1081 | 96 | | Plus |
