FMO09488.5prime Sequence
1140 bp (1013 high quality bases) assembled on 2010-10-13
> FMO09488.5prime
CAGTCGACATGAATCACCTATCGCCGCCGCCATCGCCGCACTCCCAGCAG
CCGAGTCCCGCGGGATTGGGCTGCCATGGAGCAGCTCTGGACAAGCAGTG
GATGCAGCGGGCATCCGCCTTCAACACTGTGATAGCCTCCGCCGCAGCAC
AGAAACTCAATGGTCGAGATCTGCCCTTTTTGTACAACCCGCTGCTCTAC
TCGAGTGCCCTACTGTGGCCCCAATTTTTGTTGTCCTCGGCCACGGCTCT
GGGTACACCACTGACCCCCATGACCCCCAAATCGCCCGCCTCTGTGGTTT
TGGGTCAGCGGGATCGTGACTTTGCCTTGACGCCCGAAAAGGAGCATGAA
CTCCAAATGAACAATAACAATGAGAACAGCAAGCAGGACTATCAGGAGCA
GGATGAGGATATGCCACTAAATCTAAGCACCAAGGAGCGCATCACATCGG
ATGATTCCAACCGAGATCAGTATCACAGCAGCAGCAACAACAGCAGCAGG
AGCAGTTCCAGCAGTGAAGTGGAGCAACTGCATCCGATGACCTCGCTGAA
CGTTACCCCGCCTCCCCTGAGCGCTGTGAATCTAAAGAGTTCGAGTACAC
CACAGCAACAGCGCCAGAGATCGCAGGGTAACATCATCTGGTCACCGGCC
TCGATGTGCGAGAGATCGGCGAGAAGGGAGCAGTACGGCCTGAAGATGGA
GGAGCAGGGGCGATGAGGAGGAGCACCAGGTGGATCCTATTGTGCGAAAG
TTCAAGTATGAGCGCAGAACTGCATCCATATCCTCGCTGCAATCGCCGAT
CTCCTCGCTGTCCGCTCCCGCCTCGAATGCCGTCCAGGATCTGGAGTTCG
AGGTGGCCCAACAGCAGTTGTATGCCCATCGCAGCGCATTCATGGGCCGG
ATTGACGGCAACAATCTGGAGCTGCTCACCCAGCACTTGAAGCTGAGAGC
GAGCAGCCGCAGCAGCAGCAGCACAGCATCGCATCAAGGACGAGCAGCAG
CAGATACCGCCTCGGCAGCGGCCACTCATGATTTGGGTGCAGCCGCCGGA
TCGGCTACATGCGTATCACACAACAGCGCAGCAGCAGCAGCAACACCGTG
CATCACCAGACAGCAGCGCAAGCAACATAGCATCCGCAGC
FMO09488.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:41:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sens-RA | 2451 | CG32120-RA | 219..1359 | 9..1140 | 5135 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:41:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13399567..13400468 | 1065..167 | 3985 | 98.3 | Minus |
| 3L | 28110227 | 3L | 13400748..13400907 | 168..9 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:41:57 has no hits.
FMO09488.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:01 Download gff for
FMO09488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sens-RA | 209..1339 | 1..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:40:44 Download gff for
FMO09488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sens-RA | 209..1339 | 1..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:09 Download gff for
FMO09488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sens-RA | 209..1339 | 1..1120 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:09 Download gff for
FMO09488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13399512..13400466 | 169..1116 | 97 | <- | Minus |
| 3L | 13400748..13400913 | 1..168 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:40:44 Download gff for
FMO09488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13392612..13393566 | 169..1116 | 97 | <- | Minus |
| arm_3L | 13393848..13394013 | 1..168 | 97 | | Minus |
