FMO09489.5prime Sequence
1119 bp (1000 high quality bases) assembled on 2010-10-13
> FMO09489.5prime
CAGTCGACATGGCCAACAAGCTGAGGAAATCGAACGCCATCGAATGGGCA
ACGGCCACCGGCACAGTACCGCTCCTGGAAAGGAGCTGCTGCCACAGCGA
GGACGCCGCACTGGAGCCCCAAGCGAGCAAAACCAGCCATAGAGAACAAG
CCCCCATCCTGCGCCACCTGAGCCAACTGAGCCACCTGCTCATCATCGCC
GGACTGCTGATCGTCTGCTTGGCGGGCGTGACGGAGGGCCGCCGGCATGC
GCCGCTCATGTTCGAGGAGTCCGACACGGGCAGGCGGTCCAACCGACCAG
CGGTCACCGAATGCCAGTTTGGCAAAGTTTTGCGCGAATTGGGGTCCACC
TGGTATGCGGATTTGGGTCCACCCTTCGGAGTTATGTACTGCATCAAGTG
TGAATGTGTGGCGATACCCAAGAAGCGGCGCATCGTTGCACGCGTCCAGT
GTCGCAATATCAAAAACGAGTGCCCGCCGGCCAAATGCGATGATCCCATC
TCGTTGCCCGGAAAATGCTGCAAGACCTGTCCCGGCGATCGAAACGATAC
GGATGTAGCCTTGGATGTGCCCGTGCCCAATGAAGAGGAAGAGCGCAACA
TGAAACATTACGCTGCGTTGCTAACGGGCCGCACCTCCTATTTCCTCAAG
GGTGAGGAAATGAAGTCCATGTACACCACCTACAATCCGCAGAATGTGGT
GGCCACCGCCCGTTTCCTGTTCCACAAGAAGAATCTATACTACTCCTTCT
ACACCTCATCGCGAATCGGTCGTCCGCGTGCCATTCAATTCGTTGATGAT
GCGGGTGTTATCCTGTAGGAGCATCAACTGGAGACCACCTTGGCGGGCAC
TCTCAGTGTCTATCAGAATGCCACGGGCAAGATCTGCGGTGTCTGGCGAC
GAGTTCCACGTTGATTACAGCGCATTCTGCGCGACGATCGTCTCCATGTT
GTCCTCCTTTGGGGCAACAAACAGCAAGGCCGAGTTGGTGTGGCGGAAAG
GTGGCCAAATACACCGTCCTTGCGAACGGAGTTGTTCTATTTCGCTACTG
GGAAGAACCACTTCCGATGTGAAAACGGATTCCCCACCTGGTGCCGGAAC
CGGGTCACAGCGATCTGGT
FMO09489.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:42:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sog-RB | 4841 | CG9224-RB | 1133..2238 | 7..1115 | 5030 | 97.5 | Plus |
| sog-RE | 5816 | CG9224-RE | 815..1920 | 7..1115 | 5030 | 97.5 | Plus |
| sog-RA | 4523 | CG9224-RA | 815..1920 | 7..1115 | 5030 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:42:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15607363..15607806 | 1051..607 | 1775 | 95.7 | Minus |
| X | 23542271 | X | 15625430..15625726 | 303..7 | 1485 | 100 | Minus |
| X | 23542271 | X | 15613218..15613351 | 546..413 | 670 | 100 | Minus |
| X | 23542271 | X | 15614797..15614907 | 413..303 | 555 | 100 | Minus |
| X | 23542271 | X | 15607974..15608034 | 606..546 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:42:01 has no hits.
FMO09489.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:02 Download gff for
FMO09489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sog-RA | 810..1876 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:40:47 Download gff for
FMO09489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sog-RA | 810..1876 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:10 Download gff for
FMO09489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sog-RA | 810..1876 | 1..1069 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:10 Download gff for
FMO09489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15607345..15607806 | 607..1069 | 95 | <- | Minus |
| X | 15607974..15608033 | 547..606 | 100 | <- | Minus |
| X | 15613218..15613350 | 414..546 | 100 | <- | Minus |
| X | 15614797..15614906 | 304..413 | 100 | <- | Minus |
| X | 15625430..15625731 | 1..303 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:40:47 Download gff for
FMO09489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15508830..15508939 | 304..413 | 100 | <- | Minus |
| arm_X | 15501378..15501839 | 607..1069 | 95 | <- | Minus |
| arm_X | 15502007..15502066 | 547..606 | 100 | <- | Minus |
| arm_X | 15507251..15507383 | 414..546 | 100 | <- | Minus |
| arm_X | 15519463..15519764 | 1..303 | 99 | | Minus |
