FMO09491.5prime Sequence
1140 bp (1031 high quality bases) assembled on 2010-10-13
> FMO09491.5prime
CAGTCGACATGATGTACGACAACGAGGAAGAACTGTACGAGGAGGAGAAT
GCCGAGGAGATCTCTCACGAGCTGTGGCAGGAAGCCTGCTGGATCGTGAT
TAACGCGTACTTCGACGAGAAGGGCTTGGTGCGGCAGCAGCTGGACAGTT
TCGATGAGTTCATTCAGATGTCGGTGCAGCGCATTGTGGAGGATTCCCCC
GCCATTGAGTTGCAGGCGGAAGCGCAGCACACATCCGGAGAGGTGGAAAC
CCCGCCCAGATTCTCGCTGAAATTCGAGCAAATCTATCTTTCCAAGCCAA
CACATTGGGAAAAGGATGGTTCGCCCAGTCCTATGATGCCGAACGAGGCC
CGCCTGCGAAATCTAACTTACTCCGCTCCTCTCTACGTGGACATTACGAA
AACCAAGAATGTCGAGGGCCTGGATCCCGTGGAAACGCAGCATCAAAAGA
CTTTCATAGGCAAGATTCCCATCATGTTGAGATCAACGTACTGTTTGCTA
TCACAGCTTACTGATCGTGATCTTACGGAGCTGAACGAGTGCCCGTTGGA
TCCCGGTGGCTACTTCATCATCAACGGCTCCGAGAAGGTGCTAATTGCCC
AAGAGAAAATGGCCACCAACACAGTGTACGTGTTCAGCATGAAAGATGGC
AAGTATGCCTTTAAGACTGAGATTCGGTCGTGTTTGGAGCACAGTTCCAG
ACCCACGTCTACACTGTGGGTAAACATGATGGCAAGAGGATCGCAAAACA
TAAAAAAGTCAGCCATTGGTCAGAGGATTATTGCCATCTTACCGTACATC
AAACAGGAGATACCCATTATGATTGTGTTTCGAGCATTGGGCTTCGTGGC
CGATCGCGATATTCTGGAGCATATCATCTATGACTTCGACGATCCCGAGA
TGATGGGAAATGGTGAAACCTTCTCTGGACGAGGCTTTTGTAGTCCAAGA
GCAGATGTTGCCTTGAATTTCATTGGAGCTAGAGGAGCCACGTCCCGGAG
TCAAAAAAAGAACAGCGTATAAAGTACGCTAAGAATTTTGCCAATGAATG
CTGCCCACGTGGAGTATCCGAATTCTGCAACAAGAAGCATACTTTGGGCT
ACATGTCACCCGCCTGCCTCTAGCCTCCTTGGGCAGAGGA
FMO09491.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:42:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpII140-RB | 4060 | CG3180-RB | 156..1295 | 8..1136 | 5125 | 97.4 | Plus |
| RpII140-RA | 3775 | CG3180-RA | 156..1295 | 8..1136 | 5125 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:42:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14126094..14127096 | 29..1033 | 4785 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:42:08 has no hits.
FMO09491.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:03 Download gff for
FMO09491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII140-RA | 154..1277 | 8..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:40:52 Download gff for
FMO09491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII140-RA | 154..1277 | 8..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:14 Download gff for
FMO09491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII140-RA | 156..1279 | 8..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:14 Download gff for
FMO09491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14125946..14125968 | 8..30 | 100 | -> | Plus |
| 3R | 14126096..14127196 | 31..1121 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:40:52 Download gff for
FMO09491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9951668..9951690 | 8..30 | 100 | -> | Plus |
| arm_3R | 9951818..9952918 | 31..1121 | 97 | | Plus |
