FMO09492.5prime Sequence
1082 bp (991 high quality bases) assembled on 2010-10-13
> FMO09492.5prime
CAGTCGACATGTTCTCCAGAAAGAAGCCAGAGCCAGCGAAAAGAAGGCAA
CACGATTTATCGCAGTTCGGTCTTACGGAAATCCCAGATGATTTTGATCC
CAGCGCTGGATATGGTGAGGACGATGGGGGTGACAGTGATTTGGAGGCAG
AGCTTGCGGCCATAACCGGCGGAGAAGGAGCCAAGCCAAAGCCCAAGCCC
AAAGCAAAGCTGTTACCCGCCAGTGATTTGGACAAAATGATAGCCGACAG
CTTGCGTGATGTCAGCGACGATGATGATGATGACAATTTGGAAAGCGATC
CGGATCTTCTTGGCGAGCTGAGCGGAATCGGTGGTCTAGAGGAGGCAGAG
GAAGAGGAGCCTGTCGCACAACCGCCAGCTGCCTCTGAGGAACCCGTCCA
GACCTTTCTGCCCACGACGACTGTGGACACATTAAGCATTATCAAACAGC
GCCTGGAAATGTACAAGCAGGCCGAGGCCAATGCCAAGACTGCCGGCGAT
TCTGGCAAAGCAAGGCGATTTGGAAGAGGCCTTAAGACTCTGAAAGATCT
GCACAGGCAGGCAGCGGCTGGCAAGTCCATTAACGTGGATGACATTCCAC
CTGAAGTCAGTGTAAAGCCAATTGGCGGGCAGGCTCCTCCAGTGCCTGCA
GAGGAGTCACCAGCTCCTTCCACACCTGCTTCCCCTCCGCCTGTGCCTAG
TCGTGCAGCTCCAGATCCACCAACCCCCGGCACCCCCGTGGAGCCCACTA
CATCTGTGGCTCCCACATCTCCCCCTAATCCTCTTGTGACGCAAATGCGC
AGCCGCCAGACGGACTACAAAGCTGCTGCACTGCAATCTAAGCGCAGTGG
TGACATATCTACTGCCCTTCAGTTTCTCAAAGTGTTCAAGCAATTTGACG
TAGTTATAAAATGTGTGAGACGGACAGGAGTGATTTGAGTGACATGCCCC
TCACAGCTGAGTTCTGATTCCTTAAAAATGCAGAGAGCAGCGCGAAGCTT
CGCAAACTACTGCTGCCTGAACCAACCGTTGGCTCTGTCTGTCAAGACTG
GAAAAATGTTGGAGTCTGCACCACGTTAGGAA
FMO09492.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:42:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)gd1-RB | 3043 | CG4713-RB | 123..1151 | 9..1017 | 4640 | 98 | Plus |
| l(2)gd1-RA | 2989 | CG4713-RA | 123..1151 | 9..1017 | 4640 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:42:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11107207..11108097 | 64..950 | 4260 | 99.3 | Plus |
| 2L | 23513712 | 2L | 11107065..11107121 | 9..65 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:42:11 has no hits.
FMO09492.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:04 Download gff for
FMO09492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)gd1-RA | 105..1108 | 1..991 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:40:54 Download gff for
FMO09492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)gd1-RA | 114..1117 | 1..991 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:17 Download gff for
FMO09492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)gd1-RA | 114..1117 | 1..991 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:17 Download gff for
FMO09492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11107056..11107121 | 1..65 | 93 | -> | Plus |
| 2L | 11107209..11108097 | 66..950 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:40:54 Download gff for
FMO09492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11107056..11107121 | 1..65 | 93 | -> | Plus |
| arm_2L | 11107209..11108097 | 66..950 | 99 | == | Plus |
