FMO09493.5prime Sequence
1086 bp (926 high quality bases) assembled on 2010-10-13
> FMO09493.5prime
CAGTCGACATGTCCAAGTTCTTTGTGAATGTTGCCCCCATCAACAACAGC
AACAGCAGCAGTAGCCACACAACCACCAGCAGCAACACCCAGCGCCACCA
GCAGCACCAACAACACTATGGCGGGAGCGGGACAACCGGCCACACGATGG
TGGCCCGCAGACTCAACTACGATCTGCACGGCGGCACCACCAGCATCAAC
AACAACAACAACATTGTGATCAAGAACGAGTCCGTCGACTTGGACTACGA
TCACGTCCTGAGCAGCAGCGACAGCAACAGCAACGGCGGCGTGGCAGCCC
ACCTGCGGGATCATGTCTACATCAGTCTGGACAAGGGGCACAACACGGGG
GCAGTGGCAACAGCAGCGGCGGCGGCAACGGCGGGCCACACGCAGCAGCA
ACTGCAGCAGCAGCACCACCACCAAAATCAGCAGCAACGCAAGGCGACCG
GCAAATCCAACGATATCACAAATTATTACAAGGTCAAACGTCGGCCACAC
GCCGTCAGCGATGAGATTCACCCGAAGAAGCAGGCCAAGCAGAGCGCCCA
CCACCAGACGGTGTATCAGAAGCATACGGCTAGCAGTGCGCCTCAGCAGC
TCCGGCACAGCCACCACCAGCTGCGCCACGACGCGGATGCCGAACTGGAC
GAGGATGTGGTGGAGCGGGTGGCCAAGCCGGCATCGCATCACCCCTTTTT
CGCTGTCGACGCCCCAGCAACAGTTGGCTGCGTCGGTGGCCAGCAGTTCC
TCGAGCGGAGATCGCAATCGGGCGGACACCTCGCTGGGAATACTGACCAA
AAGTTTGTGGACCTGCTGCAGAGTCACCGGATGGCGTGTTGTTCTGAACG
AGGCCTCCAATCGATTGCACGTTCAGAAGCGGCGCATCTACGACATTACC
AATGTCCTCGAAGGCATTAACATTCTTGGAGAAGAGTCGAGACACATCTA
GTTGGCGCTGCGGGCTAGTCGATGGTCAGCCAGGAGCGTTCCCGTTCACA
TCGAGCGGATTTCGTTTGCGCTTGAACCACAGAGAACGAGCTGACAGTCT
TCGATCTGATGCGCGAGAATCTTGTCTGAAATTCTC
FMO09493.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:42:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E2f1-RF | 4653 | CG6376-RF | 967..2040 | 5..1072 | 4750 | 97.1 | Plus |
| E2f1-RE | 4234 | CG6376-RE | 500..1573 | 5..1072 | 4750 | 97.1 | Plus |
| E2f1-RD | 3581 | CG6376-RD | 911..1984 | 5..1072 | 4750 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:42:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21626020..21626501 | 486..5 | 2395 | 99.8 | Minus |
| 3R | 32079331 | 3R | 21625378..21625895 | 995..481 | 2015 | 95.6 | Minus |
Blast to na_te.dros performed 2014-11-26 14:42:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2373..2619 | 38..290 | 278 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2538 | 183..438 | 230 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6968 | 179..426 | 219 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6899 | 97..290 | 154 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2643..3031 | 38..409 | 154 | 54.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1500..1587 | 201..287 | 122 | 61.4 | Plus |
FMO09493.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:04 Download gff for
FMO09493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E2f-RA | 1237..2325 | 1..1086 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:40:56 Download gff for
FMO09493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E2f-RC | 706..1794 | 1..1086 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:18 Download gff for
FMO09493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E2f1-RD | 908..1996 | 1..1086 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:18 Download gff for
FMO09493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21626024..21626504 | 1..482 | 99 | | Minus |
| 3R | 21625286..21625893 | 483..1086 | 94 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:40:56 Download gff for
FMO09493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17451008..17451615 | 483..1086 | 94 | <- | Minus |
| arm_3R | 17451746..17452226 | 1..482 | 99 | | Minus |
