FMO09496.5prime Sequence
1071 bp (937 high quality bases) assembled on 2010-10-13
> FMO09496.5prime
CAGTCGACATGGCCATGTCCAAGGTGATCCGTGTGCTGGAGAAGTCCATT
GCCCCCTCGCCGCACAGCGTATTACTGGAGCATCGGAACAAGAGCGACAG
CATCCTGTTCGAGTCCCATGCGGTGGCCCTGCTGACCCAGCAGGAGACGG
ATGTCATCCGGAAGCAGTACACCAAGGTCTGCGACGCCTACGGATGTCTG
GGTGCCCTCCAACTAAACGCCGGCGAGAGCACCGTGCTGTTCCTGGTGCT
GGTCACCGGCTGTGTGTCCATGGGCAAGATCGGCGACATCGAGATCTTCC
GGATCACACAAACCACTTTTGTCTCGCTACAAAATGCAGCGCCCAACGAA
GACAAGATCAGCGAGGTGCGCAAGCTGCTCAACTCGGGCACCTTCTACTT
TGCCCACACCAATGCCAGTGCATCGGCATCCGGAGCGTCATCGTATCGGT
TCGATATTACGCTTTGCGCCCAGCGACGCCAGCAAACGCAGGAGACGGAC
AACCGTTTCTTCTGGAATCGCATGATGCACATCCACCTGATGCGCTTCGG
TATCGATTGCCAGTCCTGGTTGTTGCAAGCCATGTGCGGCTCCGTAGAAG
TGCGCACCGTCTACATCGGTGCCAAACAGGCTCGTGCCGCCATCATTTCC
CGACTGAGCTGCGAACGGGCTGGCACGCGTTTCAATGTCCGTGGTACCAA
CGATGAGGGCTATGTGGCTAACTTTGTGGAAACCGAGCAAGTGATCTACG
TGGACGGCGATGTTACTAGTTATGTGCAGACGCGAGGATCGGTGCCACTC
TTCTGGAACAGCCAGGCGTCCAGGTTGGCTCGCACAAGTGGAAGCTATCA
CGAGGATTCGAGACATCGGCCGCCGCCTTTGATCGACACATGAGCATGAT
GAGGCAACGTTACGGCTTTCAGACGTGGTGAATCTGCTAGCAGCTCCTTG
TGGCAGCAAGGAGGGCGAAGCCATGCTGAGTAATGAGTTCATGCGTCATC
CCTGCATGTCAGCCCCAAGATGTGCCGCATGTGGGTGTTTGACCTATCCT
CAGAATGGTCGCGGCGGCCAA
FMO09496.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:41:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Synj-RC | 4638 | CG6562-RC | 185..1249 | 9..1068 | 4915 | 97.9 | Plus |
| Synj-RA | 4655 | CG6562-RA | 202..1266 | 9..1068 | 4915 | 97.9 | Plus |
| Synj-RB | 4243 | CG6562-RB | 136..1200 | 9..1068 | 4915 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:41:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22081180..22082244 | 9..1068 | 4700 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:41:41 has no hits.
FMO09496.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:59 Download gff for
FMO09496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| synj-RA | 195..1251 | 1..1053 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:40:37 Download gff for
FMO09496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| synj-RB | 129..1185 | 1..1053 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:02 Download gff for
FMO09496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Synj-RB | 129..1185 | 1..1053 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:02 Download gff for
FMO09496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22081173..22082229 | 1..1053 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:40:37 Download gff for
FMO09496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17968678..17969734 | 1..1053 | 97 | | Plus |
