FMO09502.5prime Sequence
1105 bp (932 high quality bases) assembled on 2010-10-13
> FMO09502.5prime
CAGTCGACATGACAGACCTGCTAAAGATAGCCGATGCAATCGTCCTGGAG
TACTTGCAGTCCAAGGACAAGAACCTAGCCAAGGTTTTCCAGCAGAAGAC
GAAGGCGGCCAGTGTCGCCAAAAGCAGCCCAAAGTTGAGTGAAATCCTTC
AGTTCTACCAGACCAAAAGCCCCAAAAAGATCCCAGCAATCAAGGCGACA
GCCGGAGACTCCAGCGAAGACAGCGACTCAGACTCTGAGTCTGATGCGGC
GCCTAAGAAGCCAGCGACAGCTCCTGCACTAACAAACGGCAAGGCTGTCA
AAAAGGCAGCTTCTTCAACCAGCGAGGACAGCGATTCAGAGGAGGAGAAG
AAGCCAGCAGCAAAGGCCACGCCGGCCAAGGCTGTCGGCAAGAAGGCAAA
ATCCTCCAGCGAGGACAGTTCCTCGGAGGAAGAAGCACCCAAAAAAGCTG
CTCCAGTGAAGGCACCTCCGGCCAAGGCGGCTCCCGCGAAGAAGGTTGAG
TCCAGCAGCGAGGATAGCAGTTCCGAGGAAGAACCGGCAAAGCCCGCCGT
CAAGGCCACAACGACTAAGGTTGCTCCCGCCAAGAAGGCCGACTCCAGCA
GCGAAGAAAGCAGCTCCGATGAGGAGACTAAGCCAGCTGCCAAGCCTGTA
GCCAAGGCTGCACCGGCAAAGAAAGCAGCATCCTTCAGCGAGGAAAGCGA
CTCCGATGACGAGCCAGCCGCCAAGAAGCCTGCCGTCCAGCCTGCCGCAA
AGCCAGCTCCTAAGGCAGCCGCTTCTAGTTCCGAAGACAGCAGCTCAGAG
GAGGAGGTCAAACCCGCTGCTAAATCTGCTGCCAAGTTGGCTCCCTGCTA
AGAAGGGGGCTTCCTCTAGTGATGATAGTTCCTCTGAAGACGAGGCACCC
AAAAAGGCAGCAACTCTCGCAAAGCTCATTTCTAAGCTGCTCCCACCAAA
AAGGCCGACAGTTCCACTGAGATAGTTCTTCGGAAGACGATGCTCCTAAA
ATGTAGCTTCAGCTAAGGCTACGCCAGCTAAGCCATTTCTGTCAAGAAGG
CAGCTTTCCAGCGATTGACTGCTCCTCGAAGAAAAGGGCGCTCAGAAGGC
AGCTC
FMO09502.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:37:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nopp140-RF | 2713 | CG7421-RF | 105..1204 | 8..1105 | 5105 | 98 | Plus |
| Nopp140-RE | 3232 | CG7421-RE | 105..1204 | 8..1105 | 5105 | 98 | Plus |
| Nopp140-RB | 2716 | CG7421-RB | 105..1204 | 8..1105 | 5105 | 98 | Plus |
| Nopp140-RF | 2713 | CG7421-RF | 1270..1391 | 980..1100 | 210 | 81.6 | Plus |
| Nopp140-RE | 3232 | CG7421-RE | 1270..1391 | 980..1100 | 210 | 81.6 | Plus |
| Nopp140-RF | 2713 | CG7421-RF | 1200..1300 | 1005..1105 | 190 | 82.7 | Plus |
| Nopp140-RE | 3232 | CG7421-RE | 1200..1300 | 1005..1105 | 190 | 82.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:37:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21833179..21834179 | 107..1105 | 4410 | 97.8 | Plus |
| 3L | 28110227 | 3L | 21832878..21832978 | 8..108 | 505 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 14:37:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G6 | 2042 | G6 G6_DM 2042bp | 394..543 | 585..745 | 114 | 60.2 | Plus |
FMO09502.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:19 Download gff for
FMO09502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nopp140-RB | 134..1233 | 8..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:38:26 Download gff for
FMO09502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nopp140-RB | 105..1204 | 8..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:59 Download gff for
FMO09502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nopp140-RB | 105..1204 | 8..1105 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:59 Download gff for
FMO09502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21832878..21832977 | 8..107 | 100 | -> | Plus |
| 3L | 21833180..21834179 | 108..1105 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:38:26 Download gff for
FMO09502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21825978..21826077 | 8..107 | 100 | -> | Plus |
| arm_3L | 21826280..21827279 | 108..1105 | 97 | | Plus |
