FMO09503.5prime Sequence
1124 bp (983 high quality bases) assembled on 2010-10-13
> FMO09503.5prime
CAGTCGACATGCGGCCAGGACCCGGGCTGGTCGTGATGGCGCTTGCGTTT
ATTTCGGGGGCTCGGCGTGGCAGCAGCAGCAGCATCAGCTCAGCAACAGC
AACACCAACAGCGGCAGCAACATCTGCAGCAGCAGCAGCGGCAGCAGCAG
CAACATCCGCAGCATCAACATCCGCAGCAGCAGCAGCAGCAGCAAATACA
GCAGGCGGCCGTAAAAGGGGCAGAAGTGGCGGCGGAGTCGGAGGCGGAGG
AGTTGCAACCACGTTACCGTCCACTGGCGAGTCGTCGTCATCGTCATTCG
TTCGCAGCTCTGGCTCATACCTGCTGCCCATCTTCCTGCCCCACTACCTC
GACTTCGCGCTCCAGTTCCACCCCCAACTGCCGCCGCGGGAGTACAGCCA
GGGCCGGGCCCACTCCGAGTCCTGGGCGTCCTCGAGGATAGCGGACAGGC
TTCAGCAGCGGCGACGACGACGCGAGAGCAGCAGCAGCAGGGATATAGCA
GGTAGGGCAGGCGGAACAGGCGGATCGGGAGCGGATTCAGGAGGTCTGGC
AGCCACAACCGGTCACAGCACAGAGTCAAGCGAGGCCAACAACCAGGAGG
ACGGCGAGGATCGCGGCCTGACAGTGCAGTTCCCCTCGTCGCAGGCCTAC
GACGAGGACCAGGACATCTTTGCCCTGGTGGCCGAGGACGACCTGCTGTC
CGAGGAGTCCTTCGATCGCCTGATCAAGCTCAACGAAGACGCCGACGAGG
AGGACTACAATCTGCAGCAGCAGCACTTGCCGCAGCACAAGCAGCAGCAA
CAGCAACCCGGAGCGGAAACGGAAATAGACACAGAGCCAGAGAGCGAGAC
GGAAACGGAGACGGAGACAGAGACAGACACAGAAGCGGATGTGGAAGTGG
AAAGAGAGACCGAACAGCAGCAGCAGGACGAGAGTCTGACTGATTGATGA
GGGTGTCTGCAGCACAGCGACCACAAGTAACAGCCACTCCGAAGGAGTCC
GTCATCAGCTACGATAACAACAATAACAAACCGGGAAGGCAGGCGGTCAC
ATTCTTGATGCCAGAACGGCGCAATTTGTATTTGTCCACAAGATAACACC
GTGGCCCGCCGTGGGCCAGCACCG
FMO09503.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:37:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mid1-RB | 8297 | CG33988-RB | 606..1713 | 9..1124 | 5095 | 97.9 | Plus |
| Mid1-RA | 4730 | CG33988-RA | 606..1713 | 9..1124 | 5095 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:37:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24725538..24726598 | 1073..9 | 4885 | 98.3 | Minus |
Blast to na_te.dros performed 2014-11-26 14:37:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6915 | 748..925 | 203 | 59.9 | Plus |
FMO09503.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:20 Download gff for
FMO09503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33988-RA | 592..1622 | 1..1031 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:38:28 Download gff for
FMO09503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33988-RA | 596..1626 | 1..1031 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:00 Download gff for
FMO09503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mid1-RA | 596..1626 | 1..1031 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:00 Download gff for
FMO09503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24725578..24726604 | 1..1031 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:38:28 Download gff for
FMO09503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20613101..20614127 | 1..1031 | 98 | | Minus |
