FMO09506.5prime Sequence
1180 bp (1075 high quality bases) assembled on 2010-10-13
> FMO09506.5prime
CAGTCGACATGTTTATACCAGAAACTTTAAGAGGCTGTATGATCGAGACG
GACGTTTCTTCTTATTTGCAAACATCATCATCGGGACAGGATGAATTTCA
CCCTTTTATTGAGGCACTCTTACCGTACGTCAAATCATTTTCCTACTCTT
GGTTTAATTTGCAAGCCGCCAAACGAAAATATTATAAGAAACATGAAAAA
CGTATGTCACTGGAAGAAGAAAGACATTGTAAAGATGAACTCCAGAATGA
AAAGACTGAGGTGAAGCAAAAGTGGGCTTCCCGTCTTCTTGGAAAACTCA
GAAAAGACATTACACAAGAAAGTCGAGAGGATTTTGTGCAATCTATAATC
GGGAAAAGAAAATCAATTTGTGTTCTCTCAAACCCCGATCAAAAGGGAAA
AATGAGACGAATTGACTGCTTAAGACAGGCTGACAAAGTATGGCGGCTTG
ATTTGGTCATGGTTATACTCTTCAAGGCGATTCCATTAGAAAGCACAGAT
GGTGAGCGGTTAGAAAAAAATCCGGAATGTTTACATCCAGGATTATGTGT
AAATCCGTACCACATTAACGTGTCTGTTCGGGAATTGGACTTGTACTTGG
CCAACTTTATAAATACTCATAATTCAATTAACAATACAAATACGACTTTC
TCAACTACTCCGGGCGTAAGATCGCCACATATAACTATGTATAATCGAAG
TAATGATCCAAACAGAAAAGATGAGGTCGCTGACATGAAAAATGATGTCG
TTAAACAAAACCCATATAATGGTGTTGTTTGTAATGATATTATTTTAGCA
ACTGGCGTGTTTTCTTCTCAAGAACTGTGGACATTATCTAAAGATTTAAT
TTTAGATGAATCAAATGATATAAACCTAAACTCTAGCCTTATAAAGAGGG
AGAACGTTGGAGCTACCTATGAGTGTAATACATATCAAATTAACTCTGAA
TTCTTCAATTTCTGCTGCTCAGAGTCTTGTTCAATCTGGGTCAATTTGCT
GCTAATCCGATTCAACTGGATATAGCATTTGAATTTTTATAGGATCAGAG
GATTTACACAATTATCACAAAGTTCCATTGCCACGTTACAGAATGCCCAA
ACGCCGAATTCCCATGATGCTACCAAATTCGATCCAAGGTAGCTAACGCC
ATCACGGAGACCACTGCATCGAGAAATAAT
FMO09506.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:38:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NfI-RB | 4575 | CG2380-RB | 139..1289 | 9..1170 | 5285 | 97.8 | Plus |
| NfI-RC | 4702 | CG2380-RC | 139..1277 | 9..1170 | 5125 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:38:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 273115..273714 | 843..244 | 3000 | 100 | Minus |
| 4 | 1348131 | 4 | 273761..273918 | 245..88 | 790 | 100 | Minus |
| 4 | 1348131 | 4 | 272226..272410 | 1027..842 | 740 | 96.8 | Minus |
| 4 | 1348131 | 4 | 275579..275660 | 90..9 | 410 | 100 | Minus |
| 4 | 1348131 | 4 | 272070..272161 | 1138..1043 | 205 | 90.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:38:28 has no hits.
FMO09506.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:30 Download gff for
FMO09506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NfI-RB | 133..1265 | 2..1147 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:39:02 Download gff for
FMO09506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NfI-RB | 135..1267 | 2..1147 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:30 Download gff for
FMO09506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NfI-RB | 135..1267 | 2..1147 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:30 Download gff for
FMO09506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 272226..272408 | 844..1027 | 96 | <- | Minus |
| 4 | 273115..273712 | 246..843 | 100 | <- | Minus |
| 4 | 273761..273916 | 90..245 | 100 | <- | Minus |
| 4 | 275580..275664 | 2..89 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:39:02 Download gff for
FMO09506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 292852..293034 | 844..1027 | 96 | <- | Minus |
| arm_4 | 293741..294338 | 246..843 | 100 | <- | Minus |
| arm_4 | 294387..294542 | 90..245 | 100 | <- | Minus |
| arm_4 | 296206..296290 | 2..89 | 95 | | Minus |
