FMO09507.5prime Sequence
1119 bp (1030 high quality bases) assembled on 2010-10-13
> FMO09507.5prime
CAGTCGACATGCAGTATAGTCACACTCGCATCTCAGACTGGACTTGCATT
AAGTGTGGTGCCAGCAACTTTAAGCGCCGCTTCCAATGCTACATGTGCAA
TGCGTCGCGGGCGGAGAGCGAGAATGCTCTTTACGGAGCCGGCGAGGGCG
TCGACGAGATCAGCCAAATCCTCACAAAAAAGATCATGCTTCGCGGCTTG
GACGCGCTGACAAACGAGGAGGGCGTGCTAACTGCCCTTCAGCAGCGCCT
GCCCGAACTGGCCAAAACAGTCAGCAAGGTGCTGGTCAGTCGCGACGCCC
TAACCAATGCATCTCGGGGCATTTGCTACCTCAATTTTGACACACTCATT
GATTCTATGAACGTGTTCAACGGGCTGACGGCGTTGGATCCGCCACTCAC
TCTGGACGACAAAACAGTTATCGTCACCTACTGCATTGACTCCGAAAACC
GTCAAATGATGCCAGCCGAAGGCAACTTTTTTAGAGCAGGTGAAACAGCG
ATGTCTCCGTCGGCCATTACGGCGGCCTACACTTTGGCGGATGTGCCTCG
TCTTGCGGAGTACAGTGCATCCGTGTATGCCTCGAATCCGTTGGAGCATG
CTAACTACGTCCAGTACTATACGGATTATTACACGACTGAAATAAGCAAG
AACTGCAGAGATCGTCAAGTGACGGAGGCCAACTCCGGCGCTGCCGTTGC
TCTCTCGGCCATCCAGCGCAAGCAACGGAAGGTCAGCCAGATGGAGACCA
CGGTTTCGGTGACAGAGGCGAAGGTCGCCTTCCTTGCCAGGGGTGAAAGT
GCTCCCAAGGGGAATGATGGCAAGAAATACGATACTCCCGATGTGTCCAA
GTACCAGTACGACGAGACCTCCGGCTACTACTACGACCACGTTACAGGAC
TCTACTATGATGCCCACTCGCAGTACTACTACAACACGAGACGGGCGCGT
ATTTGTACTGGGATCAGAAGCGGAGCACTATGTGCTGGCCCACCCGCTTC
ACTCAGCAGCCTCAGGAAGTATTAGCCGATGCCGAGAAAAGGAGGAGAGC
CAAAAGCAAGGGAAGAAAGAAAGAAGAAGCTGGGGGAGCCGACAGGAGTT
GCAAAAATCGTCAGGACTG
FMO09507.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:38:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4896-RI | 3118 | CG4896-RI | 961..2041 | 8..1078 | 5045 | 98.5 | Plus |
| CG4896-RG | 3781 | CG4896-RG | 1624..2704 | 8..1078 | 5045 | 98.5 | Plus |
| CG4896-RK | 3193 | CG4896-RK | 1036..2116 | 8..1078 | 5045 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:38:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1180510..1180926 | 415..831 | 2085 | 100 | Plus |
| 2L | 23513712 | 2L | 1180213..1180449 | 181..417 | 1185 | 100 | Plus |
| 2L | 23513712 | 2L | 1180994..1181210 | 831..1040 | 740 | 95.9 | Plus |
| 2L | 23513712 | 2L | 1179995..1180123 | 52..180 | 645 | 100 | Plus |
| 2L | 23513712 | 2L | 1175712..1175937 | 527..752 | 350 | 77 | Plus |
| 2L | 23513712 | 2L | 1176103..1176261 | 834..990 | 335 | 83.6 | Plus |
| 2L | 23513712 | 2L | 1179892..1179937 | 8..53 | 230 | 100 | Plus |
| 2L | 23513712 | 2L | 1175287..1175517 | 181..411 | 210 | 72.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:38:32 has no hits.
FMO09507.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:31 Download gff for
FMO09507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4896-RE | 1586..2657 | 1..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:39:04 Download gff for
FMO09507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4896-RG | 1616..2687 | 1..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:31 Download gff for
FMO09507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4896-RK | 1028..2099 | 1..1059 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:31 Download gff for
FMO09507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1179884..1179937 | 1..53 | 92 | -> | Plus |
| 2L | 1179997..1180123 | 54..180 | 100 | -> | Plus |
| 2L | 1180213..1180449 | 181..417 | 100 | -> | Plus |
| 2L | 1180513..1180926 | 418..831 | 100 | -> | Plus |
| 2L | 1180995..1181218 | 832..1047 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:39:04 Download gff for
FMO09507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1179884..1179937 | 1..53 | 92 | -> | Plus |
| arm_2L | 1179997..1180123 | 54..180 | 100 | -> | Plus |
| arm_2L | 1180213..1180449 | 181..417 | 100 | -> | Plus |
| arm_2L | 1180513..1180926 | 418..831 | 100 | -> | Plus |
| arm_2L | 1180995..1181218 | 832..1047 | 96 | -> | Plus |
