FMO09509.5prime Sequence
1174 bp (1068 high quality bases) assembled on 2010-10-13
> FMO09509.5prime
CAGTCGACATGGAATTCGCCGACCTTATAAAGACCCCCAAGCTGGACGGT
GTCCTGCTGCACGACCCATCGAATGCGGGGGCGTCGGGTGCAACAGTTGG
CACACTGTGCATCACAGGGCACCATTTGCTGCTCAGCGCCCGCCAGGAAA
CCAGCCAGGAGCTATGGTTGCTCCACAAGAACATCGACTGTGTGGAGAAG
AAGCCTAGTTTGTCGCAGAATATCGTGGTCGGTGGGATTATCACCCTGAA
GTGCAAGGACCTGCGCATCATTTCGTTGGAGATAAAGTGCGGCAAGGAGT
TCTTCAACGTGGCCGCATCGCTGGAGGCACTCAGTGCCATCCAGAACACC
GAACTGCTCTATCCATTCTTCTACCGGCCCATGTACTCGATCCTAGAGGA
CGGCTACACGATGTTTAGGCCCGAGCTGGAGTTCGCCAAACTCATAAGCG
GGGTTGGCATGGGCGGTGCGTCCTCGCCGAATGTGGCCAACATAACAATT
TGCATGCCATCAACTTCGACATCGACGTTGACTGTGGGCGCCGGCATTCC
CCATCCTCTGCAAAATGGCTATGCGATAGAAGCCCTTGCGTGTGGTGTTG
GTGGTGTGGGAGGTGGTGCGCTTCAAAGTCCCCAGGCCTCCTGCGAGTGG
CGCATCACCAACGTCAACAGAGACTTCAGCGTCTGTGCCACATATGGCGC
CACGCTAATTGTACCTAAAGCAATTTACGGACGAGCAGATAGTGCTCTCC
GCTGCGTTCCGCGATGGCGGCCGCTTCCCCGTGCTCAGCTACAGGCATGA
AAATGGCGCCACACTAATGCGCAGCTCCCAGCCGCTGTCCATTCAGGGCA
TCAAGCGCTGTAGAGCTGACGAGGCTATCCTTAATCTGGTGCTGGGTCGC
AGTCGGAAAGGGTTCATCGTGACACTTGGTGGTAAGGCAAATCGAATACG
GAAACTGACCTGCACTACTCGCAGTGGAGAAGGTAAATCGTTCATTGGAA
ACGTCAGTTCGCCCGCCTCTATTTTTGGACAGCTTTGCTCGGCTATCGAA
GCTTGCAACGATTTGGGAATGCAGTACTGATAAATGCTTATCGGCGACTG
GAAACACCGCTTGCTTAATCTTGTGGCTGACTCCACTGTAACGCCTCTTG
TGGTGACCAATGCCTGGTAACAAA
FMO09509.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:38:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5026-RC | 2447 | CG5026-RC | 387..1549 | 8..1167 | 5275 | 97.8 | Plus |
| CG5026-RB | 2822 | CG5026-RB | 387..1549 | 8..1167 | 5275 | 97.8 | Plus |
| CG5026-RA | 2472 | CG5026-RA | 387..1549 | 8..1167 | 5275 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:38:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8969496..8969886 | 417..808 | 1910 | 99.7 | Plus |
| 3L | 28110227 | 3L | 8969176..8969428 | 167..419 | 1265 | 100 | Plus |
| 3L | 28110227 | 3L | 8969948..8970235 | 808..1093 | 1045 | 95.5 | Plus |
| 3L | 28110227 | 3L | 8968914..8969073 | 8..167 | 800 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 14:38:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 2942..3010 | 824..758 | 124 | 66.7 | Minus |
FMO09509.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:32 Download gff for
FMO09509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5026-RB | 379..1487 | 1..1109 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:39:09 Download gff for
FMO09509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5026-RA | 381..1489 | 1..1109 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:35 Download gff for
FMO09509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5026-RA | 381..1489 | 1..1109 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:35 Download gff for
FMO09509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8968908..8969073 | 1..167 | 97 | -> | Plus |
| 3L | 8969177..8969427 | 168..418 | 100 | -> | Plus |
| 3L | 8969498..8969885 | 419..807 | 99 | -> | Plus |
| 3L | 8969948..8970251 | 808..1109 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:39:09 Download gff for
FMO09509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8962008..8962173 | 1..167 | 97 | -> | Plus |
| arm_3L | 8962277..8962527 | 168..418 | 100 | -> | Plus |
| arm_3L | 8962598..8962985 | 419..807 | 99 | -> | Plus |
| arm_3L | 8963048..8963351 | 808..1109 | 95 | | Plus |
