FMO09510.5prime Sequence
1126 bp (1032 high quality bases) assembled on 2010-10-13
> FMO09510.5prime
CAGTCGACATGGAACAGGTTGACTCCTCCACCGAGCTGCACCTGAATAGG
AAAGATCTGGCCGCGCTGGCCGAGGATGTTGTGAAAGAAGAGGTGATATT
AGAAAGCTCCAGCCATCACCATCATCATCATCACCACCAGTTGGACACCA
AGGTTCGCATGGTCACATCCTCCTCCAACGACAACAGTGGTAGCGGCGGC
GCCAGTGGCGGTACAAGCGGAGCGGGCGGAGGAAACGGCGGTGGCGGTGT
GGTTTCGGTGCCCGTATCCCTGCCCATCGGTTCGATGATAACCGGCACTA
CCTTCAATGTGATCACGCCCGACCAGCTGCCCCCTCACTTCAAGCCGATG
CTGTGCGTCGACAACAATGGCTACCTGTCCGGCAGCACGGTCAGCATGGG
CAACGACCTCAAGACGATCGTCATCCAGCAACAGCAGACGCAACCAGGCG
GCGGCGGTGGCGGCGCCAATAATGCGGGCACCAATACGACCGCCACAAAT
ACGATTGGACTGAATCACGATGGCTCCGGGAGCAACAATAGCCACGACAG
CCTGGCCACCTTGGAGCACGCCGCGGGCGGAGCGAGTGGCGTCGGCGGTG
GCGGCGGCGGAACGGGTGGTGGCTCCTCGGGATGGTCGGAGAACCCGTCA
ACCCAGCACAATGAGGTCTTCCAGATCCGCTGCAAAACCACCTGCGCCGA
GTTATACCGCAGCAAGCTGGGCTCCGGCGGCCGTGGACGCTGTGTGAAGT
ACAAGGACAAGTGGCATACGCCCAGTGAGTTTGAGCATGTGTGTGGCCGG
GGCTCCAGCAAGGATTGGAAGCGTTCGATCAAGTACGGCGGCAAATCGCT
GCAGTCCCTCATCGATGAGGGTACGCTCACGCCGCACGCGACCAACTGCA
GCTGCACCGTCTGCTGCGACGACGAAGCAGCTTCCGGCCCTGTCCGTCTC
TTTACACCGTACAAGCGGCGGAAGCGGAATCAAACTGATCTTCGATATTG
GGAGTCCTGGACCCAACGCAGCGTACACCCATTCTAAGTTACCACAACCA
ACAGTAAACCAATAACAACCACCCGAGCCGGGAGCGGGCCCCAACAACTG
GTGTGGAAGTAACTGCAGCGTTGGGC
FMO09510.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:37:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Deaf1-RB | 2416 | CG8567-RB | 362..1467 | 9..1119 | 5140 | 98.1 | Plus |
| Deaf1-RD | 3588 | CG8567-RD | 362..1476 | 9..1119 | 5040 | 97.3 | Plus |
| Deaf1-RA | 2425 | CG8567-RA | 362..1476 | 9..1119 | 5040 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:37:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19819209..19820001 | 138..930 | 3965 | 100 | Plus |
| 3L | 28110227 | 3L | 19818535..19818666 | 9..140 | 660 | 100 | Plus |
| 3L | 28110227 | 3L | 19828315..19828377 | 929..991 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:37:39 has no hits.
FMO09510.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:22 Download gff for
FMO09510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Deaf1-RB | 349..1338 | 1..991 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:38:35 Download gff for
FMO09510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Deaf1-RB | 355..1344 | 1..991 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:04 Download gff for
FMO09510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Deaf1-RB | 355..1344 | 1..991 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:04 Download gff for
FMO09510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19818528..19818666 | 1..140 | 97 | -> | Plus |
| 3L | 19819212..19820001 | 141..930 | 100 | -> | Plus |
| 3L | 19828317..19828377 | 931..991 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:38:35 Download gff for
FMO09510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19811628..19811766 | 1..140 | 97 | -> | Plus |
| arm_3L | 19812312..19813101 | 141..930 | 100 | -> | Plus |
| arm_3L | 19821417..19821477 | 931..991 | 100 | == | Plus |
