FMO09511.5prime Sequence
1127 bp (1048 high quality bases) assembled on 2010-10-13
> FMO09511.5prime
CAGTCGACATGTCTGGCCTCAAGAAATTCCAAAACACTGAGGAATGGCGT
CAGAAACTCCGTCAGTTTCTAATGACCGAGCGCTTGCCGAAAAAGCCCGT
GAAAATGGACGAAACGAAGGATATGCGCTATAGTTTGGAGATCGACGAGG
ATTTGAGGAGACCCTTGGAGGCGCGGGCCAAGAAAGTTCTGGCCGTTAAT
TCTGCCAGTCAAAGGACTGTTAATCTCGGCGAGGATACTATGTACGAGGC
AGGTGACTTGGAGCACTTGGACGATGGCGATGATAGCTTCAGTGCCTTTG
AGCGCATGTGCGACAAAACCGGTTCCGATCCGGATAGCACTCTTTTCCAG
TACCTGCACAGCGAGGACCGGAGTCAGGTGATGGCCAGGGCTAGGGATCA
TAGCACCGACGATCAGAAAGAGATCGATGCACTGCGTCGCATGCTAGAGG
CAGTGGGTACAGAAGACGATCTATTGGAGAACGAAAGTCCCGTCAAGGGG
GCGGAGTGCACTCACCTGGAGGACATTGAGGCGCCGTCGCGCTTTTGGGA
CAACACCCTGGCCGGAATGGACGAGACCTCATCCGACTCTGGGCTGACTC
CTAAAGCATTGACCAAGGTTTCGCCTGTCAAAATGGTGGGGCTGCTTCGC
CCCTCAACCATCATCGAAGACAGCGAACTGGAGTCGTCTGATGTGTCTTC
ACACACAAGCTTCCAAAGCGCTCGCACCCTAAAGACAAATGCATCTAGTT
CTTACGAAACAGCCACGGATACTTCCCTCAGTGGAACGCTCCTAAACGTC
GACGAATTGTTTTACGCCGCAATTGCCAAGGCCAAGCCACCAGGAATGTC
CAAGGAGAGGAGCTGGAGCTCTTAAGCGATCTTCATGGCAGTCTTAGAGA
GCTGGCCTCACTTCCGAAGGATGAGGTCGAGGAGGAGAGGACGATATAGA
GGATACATATCGAGCTATCTCTTCTGACGATGAGAGTGCAGCTAGTTCAG
AAGTAAACAAGAAGACCGTCCGGGGGTGTCCTCAGTCCACGGTAAGATCC
ACTGGACGAATCAGCGGAAAGAGCGTGAAATAAGGAAATTCGTGCATTCC
ATGATACATGCAAGAAAATGGGAGTTA
FMO09511.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:37:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sip2-RB | 2223 | CG9188-RB | 175..1303 | 9..1117 | 4980 | 97.3 | Plus |
| sip2-RE | 2040 | CG9188-RE | 65..1120 | 82..1117 | 4615 | 97.2 | Plus |
| sip2-RA | 2111 | CG9188-RA | 136..1191 | 82..1117 | 4615 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:37:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6962586..6963555 | 1042..82 | 4335 | 98.1 | Minus |
| 2L | 23513712 | 2L | 6963744..6963817 | 82..9 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:37:42 has no hits.
FMO09511.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:22 Download gff for
FMO09511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip2-RB | 166..1230 | 1..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:38:37 Download gff for
FMO09511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip2-RB | 167..1231 | 1..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:07 Download gff for
FMO09511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sip2-RB | 167..1231 | 1..1054 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:07 Download gff for
FMO09511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6962563..6963554 | 83..1065 | 97 | <- | Minus |
| 2L | 6963744..6963825 | 1..82 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:38:37 Download gff for
FMO09511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6962563..6963554 | 83..1065 | 97 | <- | Minus |
| arm_2L | 6963744..6963825 | 1..82 | 96 | | Minus |
