FMO09513.5prime Sequence
1120 bp (1005 high quality bases) assembled on 2010-10-13
> FMO09513.5prime
CAGTCGACATGAGCATGGTGCGGCGGATTATCCTGCTGGGCCCCAAATAC
AGTGTGTGGGCAAAGGGAAGCGGAGCTGGTCAAACACATGGCTCGGCAAG
ATGCGTTATCCTAAGCGCAGGTTCTGCGGAGAACAGCGACTGTGGCGTAC
GACGCTTTCACCTGGCAACGCGGAACTGCGCGAGGAATCGACTGATGAGA
CTGGAGCCCGCGATGGCAATACCGGCGTATATTGATGTAACTAACGCACA
CTCAAGAACGCCAGAGGACTCCAGCGAGAGTGGGAGCGGCAGCGAAGGGG
GAGCCAGTGCGTCGGGAGGTAGTGGAGCGAAGAGCCCCGGCGGTGCGGCT
GGGTCTGGAGCAAGTTCGACCAGTGGTGCCGATCCGCCAGGCGGTGGCAG
TGACAAGTTCCTCTCGTGCCCAAAGTGCGGCAGCGCCTGCACCCAGGTTG
AGACCTTTGTCAGCTCGACGCGGTTCGTTAAGTGCGCCAAGTGCAACTAC
TTCTTCGTGGTGCTCTCGGAGGTGGAGACTAAGCAGCGCACCAAGGACGA
GCCCAAAAACCAGCGCAAGCCGCCACCTCCGCCACAGAAAATCATGGAGT
ATCTGGACAAACACGTGGTGGGCCAAGATTTTGCCAAAAAGGTGCTGGCG
GTGGCCGTCTACAATCATTATAAGCGCATCCATCACAATCTGCCGCAACT
GCAAAACCAGGGAGCGGGTGCCAGCAATGGAGCCGGTGGCGGCCTAGATG
GTATTCCTCGGCCCGATCTTCTACACATCACCGGTATTGGTCACACGCTG
AACAGCTCCCCGGGCAACGAACTGCCACCAAAGTCGCCGACTCAATGGGC
ATGGGCGGAGGAATGGGAGGACCTGGACTTGGAGCATGACTAACCGGCGC
ATCATCTAGCAATGCGCGTGGAGTTGGCGACACCGGTCCGGATCAGAAAT
ACTTGACCGCCAGTCCACCGATGTCAAACTTGGAGAAGAGTAACATTATC
ATGTTGGGTCCCACGGGATCCGTAAAACGCTGATCGGCCAACGATCGCCA
AGTGCCTGAATGTCCTTCGCATTGGCCACTGCCCCCACGTACACAGCCGC
TATGTGGGCGAGACACTCGA
FMO09513.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:38:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4538-RD | 3865 | CG4538-RD | 791..1904 | 8..1112 | 5135 | 97.9 | Plus |
| CG4538-RC | 3244 | CG4538-RC | 791..1904 | 8..1112 | 5135 | 97.9 | Plus |
| CG4538-RA | 3126 | CG4538-RA | 337..1450 | 8..1112 | 5135 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:38:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19900811..19901811 | 1063..66 | 4670 | 98.9 | Minus |
| 3R | 32079331 | 3R | 19902840..19902899 | 67..8 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:38:53 has no hits.
FMO09513.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:34 Download gff for
FMO09513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4538-RA | 784..1911 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:39:16 Download gff for
FMO09513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4538-RA | 784..1911 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:41 Download gff for
FMO09513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4538-RA | 330..1457 | 1..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:41 Download gff for
FMO09513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19900749..19901810 | 67..1119 | 97 | <- | Minus |
| 3R | 19902841..19902906 | 1..66 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:39:16 Download gff for
FMO09513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15726471..15727532 | 67..1119 | 97 | <- | Minus |
| arm_3R | 15728563..15728628 | 1..66 | 95 | | Minus |
