FMO09514.5prime Sequence
1128 bp (1014 high quality bases) assembled on 2010-10-13
> FMO09514.5prime
CAGTCGACATGACGACTGACACCCGCCGACGCGTCAAGCTGTACGCGCTG
AATGCGGAACGGCAATGGGATGATCGTGGCACTGGCCACGTGTCATCCAC
CTATGTGGAAAGACTAAAAGGCATCTCGCTTTTGGTGCGAGCCGAATCCG
ATGGATCTCTACTTTTGGAGAGCAAGATACAACCGGACACCGCATACCAG
AAGCAACAGGATACGCTGATCGTGTGGTCCGAGGGGGATAACTTTGATCT
GGCCCTGAGTTTCCAGGAAAAGGCGGGCTGCGACGAAATATGGGAAAAGA
TATGTCAGGTGCAAGGCAAGGATCCATCTGTAGAAATAACTCAAGACATC
GTCGAAGAGTCTGAGGATGAGCGGTTTGAGGACATGTCGGATACTGCGCC
ACCCATTGAGCTACCACCCTGCGAGCTTTCCCGGCTGGAGGACATCTCGG
AAACGATACAAAGCTGTCTCTCCACGCCGCTGCGAAAGGAAAAGTTGTCG
ATGGCTCTGGAGTCGGAGAGCTATATCAAGAAGCTGCTGAACTTGTTCCA
CGTGTGTGAGGACCTGGACAATACCGAGGGCCTGCATCACCTTTTTGAGA
TCTTCAAGAACATCTTCTTGCTAAATAAGAACGCGCTCTTTGAGATTATG
TTTGCGGATGATACCATCTTTGATGTGGTCGGGTGCCTGGAGTACGATCC
GAGTGTGTCTCAGCCCAAAAAGCATCGACAGTATCTGAAGCAGTTAGCCA
AGTTCCGCGAGGCAGTGCCGATTAAAAACCTGGACCTGCTGGCTAAGATT
CACCAGACGTTCCGGGTGCAGTACATCCAGGACATTATCCTGCCCACACC
ATCGGTCTTTGTCGAAGACAACATGCTGAACACCCTGTCCAGCTTCATCT
TCTTCAACAAGGTGGAGATTGTCACGATGATCCAGGACGACGAGCGGTAT
CTCCTGGATGTGTTTGCTGTTCTCACCGATCCCACCACCGGAGAACGCCG
AAACGCCGCGACACAGTTCTCTTTCCTTCAGGAGTTCTGCACTATGCCCA
GAACTGCAGCGCAAGCCAGGACTCGGTTCTACAACTCTCTACCTGCCTAG
GCATTCTGCAGGCCTGGAACTTCACTTC
FMO09514.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:38:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flfl-RE | 3888 | CG9351-RE | 624..1739 | 8..1121 | 5260 | 98.6 | Plus |
| flfl-RD | 5618 | CG9351-RD | 524..1639 | 8..1121 | 5260 | 98.6 | Plus |
| flfl-RB | 3788 | CG9351-RB | 524..1639 | 8..1121 | 5260 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:38:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13688344..13689152 | 306..1113 | 3535 | 97.7 | Plus |
| 3R | 32079331 | 3R | 13688044..13688235 | 119..310 | 960 | 100 | Plus |
| 3R | 32079331 | 3R | 13687863..13687976 | 8..121 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:38:58 has no hits.
FMO09514.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:35 Download gff for
FMO09514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| flfl-RD | 481..1607 | 1..1128 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:39:19 Download gff for
FMO09514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| flfl-RB | 518..1644 | 1..1128 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:43 Download gff for
FMO09514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| flfl-RB | 518..1644 | 1..1128 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:43 Download gff for
FMO09514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13687857..13687975 | 1..120 | 97 | -> | Plus |
| 3R | 13688046..13688233 | 121..308 | 100 | -> | Plus |
| 3R | 13688347..13689166 | 309..1128 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:39:19 Download gff for
FMO09514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9513579..9513697 | 1..120 | 97 | -> | Plus |
| arm_3R | 9513768..9513955 | 121..308 | 100 | -> | Plus |
| arm_3R | 9514069..9514888 | 309..1128 | 97 | | Plus |
