FMO09516.5prime Sequence
1114 bp (1028 high quality bases) assembled on 2010-10-13
> FMO09516.5prime
CAGTCGACATGAGTCGCTTGCAAAAGCAAAACTACGAGATCTTAAGCGGT
ACAAGTACGTCGCGCCTCAAGAATCATCAACATCCCCGTGAATCGGAGTC
ACTAGCCTACGAGGAGCCAGATCAAATGGTGCGGAATCATCTAAATGGCC
AGCTGGTAGCCAATGGCAATGGCAAAACGCGAAAGAATAGCAATTCCGAA
ACGATGACCAATGGGAAAAAGTCCAAACTGAATACGGAGGGATCCGGCTC
TGGTTCTGGAAAGACCTTGAACTACAATAATAATAACAATAACAACAACA
GCATCAGTGCCACCAACGGTCAGTACACCAATAGCAGCAGCAAGACCACT
TCAGCATCTGCAAGGGATTACACTTACCGCGAGACCATATCACCGCCCAC
ACCTCCATCCCCGCCCACCACAAATGTGGCGGATATTGTTTGCATATCGG
ATGCGGAGAGCGAGGACGGACGTGATCCCGAGCGGGAGTACTACGACCAG
GACATGGAGGAGGATGAGCCGAACGGGATAGAGATCGATGAATCCAGCTC
CAGCTTGTCCAAGGCCAAGTCCAACAATGCAGCTGCAGCGGCGGCGGCGG
CGGCTGCAGCAGCGGCAGCAGCAGCCTCGAAGGCCTCCTCGTCGACCACG
CCCTCCTACGCCATGCCCACCAGCAATAGTACACCCCTTGATCTGGACAA
TGAGGCCCATCAACGGGACCTGGAGGCGGTCACCGATCTGAAATACTACG
TAAAATTGTACAGTGATGAGGCCGTTAGTCTGAATGACTTCAAAATAATA
CGCGTTCTCGGAACAGGTGCCTATGGGCGGGTTTTCCTCGTTCGCAAGCT
AACTAGACACGATGCCCGGAAAATTGTATGCAATGAAGGTTCTCAATAAG
ATAACGGTGGTCCAGAAGCGAAAAACCGCGGACACACCAAATCGGAGAGA
GTGGTACTGGAGGCCATTCACGTAATCCCTTCCTCGTGAGTCTTACACTA
CGCCTTCCAATCCTCATCAAAGCCTTTACCCTCGTGCTAGACTTTGCCAA
TGGGCGGTGAGCCTCTTTCACGCATCTCTACACCTCTGGAACTTTGAGGG
AGTCCGGTGCATGG
FMO09516.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:39:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| JIL-1-RC | 6550 | CG6297-RC | 1055..2147 | 8..1105 | 5170 | 98.6 | Plus |
| JIL-1-RA | 5712 | CG6297-RA | 217..1309 | 8..1105 | 5170 | 98.6 | Plus |
| JIL-1-RB | 5147 | CG6297-RB | 1055..2147 | 8..1105 | 5170 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:39:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11090898..11091640 | 750..8 | 3700 | 99.9 | Minus |
| 3L | 28110227 | 3L | 11085426..11085563 | 956..819 | 580 | 97.8 | Minus |
| 3L | 28110227 | 3L | 11085640..11085709 | 819..750 | 350 | 100 | Minus |
| 3L | 28110227 | 3L | 11083416..11083486 | 1023..953 | 260 | 97.2 | Minus |
Blast to na_te.dros performed 2014-11-26 14:39:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..6903 | 270..425 | 186 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6768..6859 | 270..363 | 177 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2666 | 282..648 | 166 | 54.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2413 | 258..362 | 164 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6704..6820 | 250..363 | 162 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2384..2538 | 259..412 | 159 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2464 | 275..362 | 154 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6786..6879 | 270..362 | 152 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6805..6906 | 259..362 | 145 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2440..2533 | 270..362 | 143 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2362..2440 | 285..362 | 140 | 65.8 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2624..2673 | 269..317 | 139 | 78 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6793 | 279..363 | 135 | 66.3 | Plus |
| rover | 7318 | rover ROVER 7318bp | 1239..1318 | 264..343 | 129 | 65.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1074..1164 | 270..359 | 128 | 61.5 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2632..2663 | 270..301 | 124 | 87.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1589 | 287..363 | 122 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2762..2855 | 253..343 | 121 | 60.6 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 523..627 | 264..367 | 117 | 60.7 | Plus |
| TART-A | 13424 | TART-A 13424bp | 8366..8433 | 249..320 | 116 | 68.5 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 19..57 | 270..308 | 114 | 76.9 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7057..7095 | 270..308 | 114 | 76.9 | Plus |
| TART-A | 13424 | TART-A 13424bp | 8607..8664 | 547..604 | 110 | 65.5 | Plus |
FMO09516.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:36 Download gff for
FMO09516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| JIL-1-RA | 212..1316 | 1..1110 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:39:22 Download gff for
FMO09516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| JIL-1-RB | 1050..2154 | 1..1110 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:48 Download gff for
FMO09516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| JIL-1-RB | 1050..2154 | 1..1110 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:48 Download gff for
FMO09516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11083401..11083485 | 954..1040 | 95 | <- | Minus |
| 3L | 11085429..11085562 | 820..953 | 97 | <- | Minus |
| 3L | 11085640..11085708 | 751..819 | 100 | <- | Minus |
| 3L | 11090898..11091643 | 1..750 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:39:22 Download gff for
FMO09516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11076501..11076585 | 954..1040 | 95 | <- | Minus |
| arm_3L | 11078529..11078662 | 820..953 | 97 | <- | Minus |
| arm_3L | 11078740..11078808 | 751..819 | 100 | <- | Minus |
| arm_3L | 11083998..11084743 | 1..750 | 99 | | Minus |
