FMO09517.5prime Sequence
1163 bp (1052 high quality bases) assembled on 2010-10-13
> FMO09517.5prime
CAGTCGACATGTCTGTGGACAACCCGTATTACTTTTGCAATGAAACCAAG
TCGCCGCGCACCCCGGACTCGCAGTCCTCCAGCCGGGGATTCTCGATCTT
CAAGCGGCGCAACTCGAAGGGCAGCAGCCCCCGGCCGCTGGTGATGACCA
ATCCGGAACAGATGCGACTGATCACATCCGCCAATCTGGATACCACGGCT
ACCATGGCATTAGGAAGTCCGCGGGGCAGCTTCAATTCCCTCGCCGGCTA
TCCGCAACACGCGATTGAACTGCAGACGATGAACATGTACCGCCAGCGAT
CTGCAAATTCGCACTCAGAGTTCCGGGAACGCCTGAATTCTTGCAACGAG
ACCCACAGCTCCCAGTGTCCCGGAGGAGGAGGTGCATCCGTAGCTGGGGA
TCACGACGAGGTCTTCAATCCGCTGACATCGCCAACAAGTAGCAAATCGC
ATCGACATCACACCCTGCCAAGTGGCGGAACTCGTCGCCATTCCCTGGGA
AACTGGGCCCAACATCAGCATCAACAGCAACATCAACAGAACTCTGGAGC
AATGGGACTGGGATCTCCGGATGAGGTGCCCAGCATGATGGCGCCTCGAC
CGCCGCTCCTCTCGCCAAACAAATTCCGCGGCAGTTCCCATCGACGAAGA
GACAACTGCGGCAACGTGAACAACACGAGTGGATCGAGTGCATCCGGATT
CCTGGGCTCTCCCGGCTACAACATGGACGACATCCTGATCATCACCGCCA
AGCACAGCGAGCGCGCCTATTTGAGGGCCACTTTCCTGAAGAACCACTTC
GACAAGATCACCAAACAGCGCGGACGGAAACCATTCAATTTTCTGCACAT
CAAAATTGACGATGGTCCCTTCAGCGAGGAGATTGCCCACAAGTATCAGA
ACACAGCTTTGCAGATTGTGATCCTCTGTCCCGCACTTTTGGGCCCTTCC
TCACAGCTTTCTGATGACCCAGCTATCGGCATTATTCGCGTGAAAAGGTA
CTGGGCCATTTTGTTGGATGTTCAGCGAGGGAGAAGGGTGAAGGAAATGC
ACAGTCGGGCACTGGCCAGTTACCTACAGTGGGCGTCGTTGTGTGGGGTG
GCGCGACAATGACAGTGTCAAATCAGCAAATATCCTGGCCATGCCACGGA
AATCTGGGGACCG
FMO09517.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:39:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stumps-RC | 4679 | CG31317-RC | 463..1609 | 9..1161 | 5190 | 97.6 | Plus |
| stumps-RE | 4594 | CG31317-RE | 390..1524 | 18..1161 | 5090 | 97.3 | Plus |
| stumps-RB | 3787 | CG31317-RB | 213..717 | 651..1161 | 1980 | 94.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:39:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14592281..14592520 | 18..257 | 1200 | 100 | Plus |
| 3R | 32079331 | 3R | 14593002..14593215 | 438..651 | 1070 | 100 | Plus |
| 3R | 32079331 | 3R | 14604416..14604604 | 650..838 | 945 | 100 | Plus |
| 3R | 32079331 | 3R | 14592661..14592842 | 258..439 | 910 | 100 | Plus |
| 3R | 32079331 | 3R | 14604693..14604946 | 839..1096 | 765 | 93.5 | Plus |
Blast to na_te.dros performed 2014-11-26 14:39:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2359 | 484..551 | 135 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2448..2476 | 510..538 | 118 | 89.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6762 | 510..541 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6783 | 510..541 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6804 | 510..541 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1556..1586 | 509..539 | 110 | 83.9 | Plus |
FMO09517.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:37 Download gff for
FMO09517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stumps-RC | 453..1473 | 1..1021 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:39:25 Download gff for
FMO09517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stumps-RC | 455..1475 | 1..1021 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:51 Download gff for
FMO09517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stumps-RC | 455..1475 | 1..1021 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:51 Download gff for
FMO09517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14592275..14592520 | 12..257 | 98 | -> | Plus |
| 3R | 14592661..14592842 | 258..439 | 100 | -> | Plus |
| 3R | 14593004..14593215 | 440..651 | 100 | -> | Plus |
| 3R | 14604418..14604604 | 652..838 | 100 | -> | Plus |
| 3R | 14604693..14604875 | 839..1021 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:39:25 Download gff for
FMO09517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10417997..10418242 | 12..257 | 98 | -> | Plus |
| arm_3R | 10418383..10418564 | 258..439 | 100 | -> | Plus |
| arm_3R | 10418726..10418937 | 440..651 | 100 | -> | Plus |
| arm_3R | 10430140..10430326 | 652..838 | 100 | -> | Plus |
| arm_3R | 10430415..10430597 | 839..1021 | 97 | == | Plus |
