FMO09518.5prime Sequence
1075 bp (927 high quality bases) assembled on 2010-10-13
> FMO09518.5prime
CAGTCGACATGTTTCGATCAAGTTTCGACGAAAACTTAGAAAATGCCACC
AGTCACTTGCGTCTGGAGCCCGACTGGCCATCAATTCTTCTGATTTGCGA
TGAAATCAACCAGAAAGATGTCACTCCCAAGAATGCCTTTGCCGCCATCA
AGAAGAAGATGAACTCGCCCAACCCGCACTCCTCCTGCTATTCCCTCCTG
GTCCTCGAGAGCATCGTCAAGAACTGCGGCGCACCCGTTCACGAGGAGGT
GTTCACCAAGGAGAACTGCGAGATGTTCAGCAGTTTCCTCGAGTCGACGC
CCCACGAGAACGTGCGCCAGAAGATGCTGGAGCTGGTGCAGACCTGGGCG
TACGCCTTCCGCTCCTCGGACAAGTACCAGGCCATCAAGGACACCATGAC
CATCCTGAAGGCGAAGGGGCACACTTTCCCCGAACTTCGGGAGGCAGATG
CCATGTTCACGGCGGACACGGCGCCCAACTGGGCAGATGGCAGGGTATGC
CATCGCTGTCGCGTGGAGTTCACCTTCACCAACCGGAAGCACCACTGCCG
GAACTGCGGCCAGGTCTTCTGTGGCCAATGCACGGCCAAGCAGTGTCCGC
TGCCCAAGTACGGCATCGAAAAGGAGGTGCGTGTGTGCGACGGCTGCTTC
GCTGCCCTCCAGCGTCCGACGAGCGGCAGTGGAGGCGCTAAGTCCGGACC
ACGTCCGGCGGACAGCGAGCTACCGGCGGAGTATCTGAACAGCACTTTGG
CGCAGCATGTGCAGACACCAGCTCGCAAGACCGAGCAGAACTCAAGGAGG
AGGAGGAACTGCAGCTGGCGCTGGCCCTCAGTCAATCGGAAGCGGAGCAG
CAGAAGCCCAAGCTGCAATCCCTGCCACCCGCTGCCTATCGCATGCAGCA
AGGTCTCCCAGTCCTGGAGCACCGCCAGACCCAAAGAGTATCATCCAGCA
GCCGGAGAGCTACCAATCCGGAGCTGGACAAGTACTTGAACCGCAGCGTA
CTGGGAGCATCGCAGATCAGCTATCGTCATTCTATGCAAGTCCTCGGTAT
CGAGCCCAATGCACACTCGCAACCA
FMO09518.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:39:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hrs-RC | 2665 | CG2903-RC | 89..1150 | 7..1062 | 4830 | 97.7 | Plus |
| Hrs-RB | 2714 | CG2903-RB | 138..1199 | 7..1062 | 4830 | 97.7 | Plus |
| Hrs-RA | 2251 | CG2903-RA | 58..736 | 390..1062 | 2930 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:39:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2741106..2741482 | 388..764 | 1870 | 99.7 | Plus |
| 2L | 23513712 | 2L | 2740520..2740785 | 125..390 | 1330 | 100 | Plus |
| 2L | 23513712 | 2L | 2741557..2741811 | 763..1014 | 865 | 94.6 | Plus |
| 2L | 23513712 | 2L | 2740387..2740473 | 38..124 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:39:15 has no hits.
FMO09518.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:37 Download gff for
FMO09518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrs-RC | 83..1130 | 1..1043 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:39:26 Download gff for
FMO09518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrs-RB | 132..1179 | 1..1043 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:53 Download gff for
FMO09518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrs-RB | 132..1179 | 1..1043 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:53 Download gff for
FMO09518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2740389..2740473 | 40..124 | 100 | -> | Plus |
| 2L | 2740520..2740784 | 125..389 | 100 | -> | Plus |
| 2L | 2741108..2741482 | 390..764 | 99 | -> | Plus |
| 2L | 2741559..2741842 | 765..1043 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:39:26 Download gff for
FMO09518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2740389..2740473 | 40..124 | 100 | -> | Plus |
| arm_2L | 2740520..2740784 | 125..389 | 100 | -> | Plus |
| arm_2L | 2741108..2741482 | 390..764 | 99 | -> | Plus |
| arm_2L | 2741559..2741842 | 765..1043 | 93 | | Plus |
