FMO09519.5prime Sequence
1112 bp (986 high quality bases) assembled on 2010-10-13
> FMO09519.5prime
CAGTCGACATGCCTGTGGTAAAACAGCGGAAAATGAGCCGCTTTAAGATG
TCCCCCGGCGCCCATTTGCAGATGTCCCCGCAGAACACTTCGTCCCTAAG
TCAACACCATCCACATCAACAGCAACAGTTACAACCCCCACAGCAGCAAC
AACAGCATTTCCCTAACCATCACAGCGCCCAGCAACAGTCGCAGCAGCAG
CAGCAACAGGAGCAACAGAATCCCCAGCAGCAGGCGCAACAGCAGCAGCA
GATACTCCCACATCAACATTTGCAGCACCTGCACAAGCATCCGCATCAGC
TGCAACTGCATCAGCAGCAGCAACAACAACTCCACCAGCAACAGCAGCAA
CACTTCCACCAGCAGTCGCTGCAAGGGCTGCATCAGGGTAGCAGCAATCC
GGATTCGAATATGAGCACTGGCTCCTCGCATAGCGAGAAGGATGTCAATG
ATATGCTGAGTGGCGGTGCAGCAACGCCAGGAGCTGCAGCAGCAGCGATT
CAACAGCAACATCCCGCCTTTGCGCCCACACTGGGAATGCAGCAACCACC
GCCGCCCCCACCTCAACACTCCAATAATGGAGGCGAGATGGGCTACTTGT
CGGCAGGCACGACCACGACGACGTCGGTGTTAACGGTAGGCAAGCCTCGG
ACGCCAGCGGAGCGGAAACGGAAGCGAAAAATGCCTCCATGTGCCACTAG
TGCGGATGAGGCGGGGAGTGGCGGTGGCTCTGGCGGAGCAGGAGCAACCG
TTGTTAACAACAGCAGCCTGAAGGGCAAATCATTGGCCTTTCGTGATATG
CCCAAAGTAAACATGAGCCTGAATCTGGGCGATCGTCTGGGAGGATCTGC
AGAAGCGTCGTAAGAGCCGGTGGCGCCGGAAGCGGGGAGGTGGCGCTGGT
TCCGGTTCTGGAAGCGGTGCGGCAAAGCGCCCGTCTGATGCTGCCAGTCA
GCGACAACAGAGATCACGACTATTTCATAAGCAGCAACGGGCGTGGGCGT
CGGTGTGCCAGGTGGTGGCGGAAGCCATACCGCTGGCTTCGAGGATCACA
ATACGGAAGGTGCAGCAGTCACCTCATTCCGCCCAGCAACAGCAAACGCG
GCACAGCAACAG
FMO09519.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:39:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tlk-RE | 5537 | CG34412-RE | 193..1312 | 5..1112 | 5015 | 97.4 | Plus |
| tlk-RC | 5849 | CG34412-RC | 545..1624 | 45..1112 | 4830 | 97.4 | Plus |
| tlk-RI | 4673 | CG34412-RI | 377..1456 | 45..1112 | 4830 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:39:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3781653..3782731 | 46..1112 | 4485 | 96.8 | Plus |
| X | 23542271 | X | 3724829..3724871 | 5..47 | 200 | 97.7 | Plus |
Blast to na_te.dros performed 2014-11-26 14:39:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2545 | 102..331 | 465 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2576..2988 | 97..513 | 390 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6951 | 102..328 | 387 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..7016 | 102..363 | 375 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2781 | 102..513 | 367 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..7200 | 102..511 | 306 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6869..7112 | 102..351 | 218 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2336..2428 | 468..568 | 135 | 64.4 | Plus |
FMO09519.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:38 Download gff for
FMO09519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tlk-RE | 190..1312 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:39:28 Download gff for
FMO09519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tlk-RE | 190..1312 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:56 Download gff for
FMO09519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tlk-RE | 190..1312 | 1..1112 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:56 Download gff for
FMO09519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3724826..3724871 | 1..47 | 93 | -> | Plus |
| X | 3781655..3782731 | 48..1112 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:39:28 Download gff for
FMO09519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3618859..3618904 | 1..47 | 93 | -> | Plus |
| arm_X | 3675688..3676764 | 48..1112 | 97 | | Plus |
