FMO09520.5prime Sequence
1125 bp (1059 high quality bases) assembled on 2010-10-13
> FMO09520.5prime
CAGTCGACATGGGCTTGCCGCTTGACGAAAACAGTCGTGATCTCATACGC
AGTTTCCACACACTCTGCTTAAATCTGGAAGAGCAACTGCCGCTGTTTGA
ACTAGAAACCAACGCTACGACAAAAATAAAGGCCAATACAAAAGATCGCG
TACCCAAACACATCGGGCATATACGCTATTTGCGACTCACAGATACTTAT
CGCAACAATAAACAAAGCTCCTCGGAACCCTCGGTCGTCGACCAGAGAAG
AGGCAGACTCGAAATGGATGCCTCCGGCGCCGCCACAATGGCAGTCCTCT
CCAGCCTGCTTGTGTTTTTGGCCCTCTCGTCCAGTCTGTGCTCAGCCGGC
ACCCTCAACGCCCGTCCTGCGTTTCCCGTACAATCCGGCGAAATTCAGCC
CAGCGGCCAGAACAGCAAGCAGGCAGCCAGACGCGTGATGCATCCTTCCT
TCGCCAACGCCGGCCGTACTCCCGGCCTGGAAATCTGGCGCATCGAGAAT
TTTGAGCCCGTTATATATCCCAAAACTAACTACGGCAAATTTTACACTGG
GGACTCGTTTATTGTTCTTAATACAATTGAAAACAAGAAAGACAAAAAAC
TGTCTTGGGATGTGCACTTCTGGCTGGGATTGGAGACCTCGACCGATGAG
GCCGGAGCTGCAGCTATTCTCACCGTCCAGTTGGATGACTTGCTGAATGG
TGGCCCTGTTCAACATCGCGAGGTGCAGGACCACGAGTCCCAGCTGTTTC
TGAGCTATTTCAAAAACGGCATTCGCTATGAACAGGGCGGCGTCGGAACT
GGCTTCAAGCATGTAGAGACAAACGCCCAAGGAGAAACACGACTATTCCA
GGTCAAGGGCAAGCGAAACGTGCGCGTCCGACAGGTGAATCTTTCCGTGT
CGTCGATGACACGGGTGATTGCTTTATTTTGGATGCCGGCAGCGATATAT
ATGTCTACGTAGCTCCCAGGCCAAGCGCGTTGAGAAGCTAAAGGCTATCA
GCGCTGCAAACCAGATCAGGGACCAGGATCATAACGGACGAGCCGTGTTC
AGAATCGTCGACGACTCAGACACTGATGCCGATAAGCAGCACTTCTTCCG
ACTGCTGGATCGGCCCTGCTTGAAC
FMO09520.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:39:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gel-RJ | 2897 | CG1106-RJ | 126..1233 | 9..1113 | 5330 | 99.2 | Plus |
| Gel-RD | 2940 | CG1106-RD | 212..1276 | 52..1113 | 5115 | 99.2 | Plus |
| Gel-RB | 2836 | CG1106-RB | 109..1172 | 53..1113 | 5110 | 99.2 | Plus |
| Gel-RD | 2940 | CG1106-RD | 126..169 | 9..52 | 220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:39:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4238818..4239150 | 768..1098 | 1410 | 97.6 | Plus |
| 3R | 32079331 | 3R | 4236549..4236804 | 49..304 | 1280 | 100 | Plus |
| 3R | 32079331 | 3R | 4238570..4238766 | 573..769 | 985 | 100 | Plus |
| 3R | 32079331 | 3R | 4237622..4237817 | 302..497 | 980 | 100 | Plus |
| 3R | 32079331 | 3R | 4238301..4238377 | 496..572 | 385 | 100 | Plus |
| 3R | 32079331 | 3R | 4236105..4236148 | 9..52 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:39:26 has no hits.
FMO09520.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:38 Download gff for
FMO09520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gel-RH | 197..1312 | 9..1120 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:39:29 Download gff for
FMO09520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gel-RJ | 126..1241 | 9..1120 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:59 Download gff for
FMO09520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gel-RJ | 126..1241 | 9..1120 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:59 Download gff for
FMO09520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4236105..4236148 | 9..52 | 100 | -> | Plus |
| 3R | 4236553..4236804 | 53..304 | 100 | -> | Plus |
| 3R | 4237625..4237817 | 305..497 | 100 | -> | Plus |
| 3R | 4238303..4238377 | 498..572 | 100 | -> | Plus |
| 3R | 4238570..4238765 | 573..768 | 100 | -> | Plus |
| 3R | 4238819..4239174 | 769..1120 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:39:29 Download gff for
FMO09520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 64292..64487 | 573..768 | 100 | -> | Plus |
| arm_3R | 61827..61870 | 9..52 | 100 | -> | Plus |
| arm_3R | 62275..62526 | 53..304 | 100 | -> | Plus |
| arm_3R | 63347..63539 | 305..497 | 100 | -> | Plus |
| arm_3R | 64025..64099 | 498..572 | 100 | -> | Plus |
| arm_3R | 64541..64896 | 769..1120 | 96 | | Plus |
