FMO09521.5prime Sequence
1142 bp (1017 high quality bases) assembled on 2010-10-13
> FMO09521.5prime
CAGTCGACATGCCTTCGGCACGACCTGGTAGTCTCAAGGATCCGGAAATA
GCCGACCTATTCAACAAGCATGACCCGGAGAAAATCTTCGAGGACCTGCG
CGAAATCGGCCATGGGTCTTTCGGCGCGGTCTATTATGCGCGATGCAACC
TCACCAGGGAGATCGTGGCCATCAAAAAGATGTCGTACACCGGCAAGCAG
AGCCAGGAGAAGTGGCAGGATATTCTCAAAGAGATACGCTTCCTTCGCCA
ATTGAACCACCCGAACACCATAGAATACAAGGGATGCTATTTGCGCGAAT
CAACCGCCTGGCTGGTGATGGAGTACTGCGTGGGCTCCGCCTCGGACATC
ATCGAGGTGCACAAGAAGCCGCTGCACGAGGACGAGATCGCCGCCATCTG
TCTGGGCGTGCTCAGTGGGTTGAGCTATCTGCACTCGCTGGGCCGCATCC
ACCGTGACATCAAGGCGGGCAACATCCTGCTCACGGACAACGGCGTCGTC
AAGCTGGCCGATTTCGGTAGCGCTGCCATCAAGTGTCCGGCCAACAGTTT
TGTCGGCACGCCCTATTGGATGGCGCCCGAGGTGATCCTGGCCATGGACG
AGGGCCAATACGACGGCAAGGTGGACGTGTGGTCGCTGGGCATCACCTGC
ATCGAACTGGCAGAGCGCAAGCCTCCCTACTTTAACATGAACGCCATGTC
GGCGCTCTACCACATTGCGCAGAATGAGTCGCCGACTCTTCCGAAGAACG
ACTGGTCGGATGCGTTTTGCAGCTTTGTTGAACTGTGCCTCAAGAAGATG
CCAGCAGAGCGACCCTCGTCGGCCAAGCTGTTGACCCACGCCTACGTGAC
CCGACCGCGTTCCGACACCGTGCTGCTGGAGCTGATCGCGCGCACCAAGT
CAGCGGTGCGCGAGCTGGACAACCTCAATTACCGCAAGATGAAGAAGATA
TTCATGGTGGACACCTGCGAGACGGAAAGCGCCGTTGGGCGGACACCGTA
CGACCAACAGGACGACCATGCCCGGCGGCGACTGCAGCAAGTAGCAATAG
TTATTACTTCCGGAACCACTCCATACCCTCGGTGGGGTGTATCGGCAGCC
AGTTAGTTCCAGAGCTCTCTCTACTCAATTTCATAACCGGCT
FMO09521.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:39:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tao-RJ | 2744 | CG14217-RJ | 503..1622 | 8..1142 | 5205 | 98.1 | Plus |
| Tao-RF | 5483 | CG14217-RF | 503..1622 | 8..1142 | 5205 | 98.1 | Plus |
| Tao-RH | 2720 | CG14217-RH | 443..1562 | 8..1142 | 5205 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19576695..19577200 | 743..238 | 2530 | 100 | Minus |
| X | 23542271 | X | 19576045..19576396 | 1103..743 | 1305 | 95.3 | Minus |
| X | 23542271 | X | 19577265..19577495 | 238..8 | 1155 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:39:30 has no hits.
FMO09521.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:39 Download gff for
FMO09521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tao-1-RD | 142..1246 | 1..1121 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:39:32 Download gff for
FMO09521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tao-RH | 439..1543 | 1..1121 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:01 Download gff for
FMO09521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tao-RH | 439..1543 | 1..1121 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:01 Download gff for
FMO09521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19576039..19576395 | 744..1112 | 95 | <- | Minus |
| X | 19576695..19577199 | 239..743 | 100 | <- | Minus |
| X | 19577265..19577499 | 1..238 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:39:32 Download gff for
FMO09521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19470072..19470428 | 744..1112 | 95 | <- | Minus |
| arm_X | 19470728..19471232 | 239..743 | 100 | <- | Minus |
| arm_X | 19471298..19471532 | 1..238 | 98 | | Minus |
