FMO09522.5prime Sequence
1140 bp (1026 high quality bases) assembled on 2010-10-13
> FMO09522.5prime
CAGTCGACATGAGAACTCTGCCATTTTTGTTGGCGCTGGCGCTCTTGGCC
TTTGGAGTTGCCTCATCATCATCCTCCACCACCAGCACCACCACATCGGT
AAAGCCAAAAACCGCAAATCCAAAGGCTGAGTCCGATAAACCCACCAAGC
AGCCATCGCCATCCGCATCCCCATCGCCATCATCCAAGGCCACAAACACC
TCAACGACCCGGCAATCTAAAGCCTTGAAGCCGGGCGAGAATCGTGGCAA
GAGAACGCTTTATGACTTTGGAAATGCCGGTTATCTGTATCCCGAAGTGG
CATCCCGGAGGGCTGGCTACGTGGACAACGCAGCGAGCTATTATCCCCAA
ACTGGTTACTACAATGGTCAGAGTGCAGTTGCTCAATATCCCGGAAGCTT
TGGACCCGCCTATGCTCAATATCCTCAGTATTTGGAGGCTCCAGAGCCCA
TCATCGAGATCATCATCAAGGATGCGAATGAAACATTAGCGGAAGAGCCC
GCGCAGCCGATTGTGACCAAGAAGAAGAAGAAGAAGGAGAAGGTGCACGT
GTTCTATGTAAACTACAAGAAGGATCAGAACAACAAGTTGCACCTGGAGT
CGCCAATTGCTTCGCTGAACAACGACGACAACGAGGAGGAAGAAGAGGAG
GAGGAGGAAGTCATCCAGTATCCGGTTACGCCCCTGCCTCCGGTAAAATC
CACCACCCTGCGTACTATTATCCACCCGGACTCGGAGAAATACCACAGTA
ACTCCGGTATTCATGTGTCGTTCGGAGCGGAGAACAAGCACCAGACCGGT
CACATTCTGGAGGAGCATGATGCTGAGAGCATTCAGCGCCAAGTGGTGGC
ACTGCCGCCTTCGGTGTCCTCCAAATCGGAGGTCAGCTATGTGAGCATAC
CCGAGCGATTACGGAAGAGAAACACTTTGGATCCCGGGCCAGGACCTATT
TCCATATGCTCTTGGCAGCACTACCACAGTCGGGTATCACTACAGCAGCA
ACACAGCACTGCCACGCAGCAAGCACACTACTCAGCGCATCGTCTTGGTG
GTTCCTCCCCCAACTACCCGAACCAGGCCCAGCACAGGTGCAGCAGCCCA
TCGCCCAGATCCCTAAGCATGCCTCCACTTCCTCAGACAT
FMO09522.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:38:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12964-RB | 3857 | CG12964-RB | 160..1283 | 9..1106 | 4905 | 97.3 | Plus |
| CG12964-RC | 3942 | CG12964-RC | 245..1368 | 9..1106 | 4905 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:38:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15488774..15489350 | 954..381 | 2660 | 99 | Minus |
| 2R | 25286936 | 2R | 15489547..15489899 | 381..29 | 1765 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:38:42 has no hits.
FMO09522.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:32 Download gff for
FMO09522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12964-RB | 213..1389 | 1..1140 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:39:11 Download gff for
FMO09522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12964-RC | 237..1413 | 1..1140 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:37 Download gff for
FMO09522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12964-RC | 237..1413 | 1..1140 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:37 Download gff for
FMO09522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15488554..15489349 | 382..1140 | 94 | <- | Minus |
| 2R | 15489547..15489898 | 30..381 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:39:11 Download gff for
FMO09522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11376059..11376854 | 382..1140 | 94 | <- | Minus |
| arm_2R | 11377052..11377403 | 30..381 | 100 | <- | Minus |
