FMO09523.5prime Sequence
1131 bp (1016 high quality bases) assembled on 2010-10-13
> FMO09523.5prime
CAGTCGACATGTTTCCACCGCGGTTGCTGCGAATCGCATTTGTGATATGC
CTGCTGATTGTCTTGCTCTCGCCCTCCGCAGACAGTGCACAGACCAAGAC
ACGTCGTCGACTGCGGCGTCCCACAACATCGGTCAGCTCCTCGAGGAGCA
ACCTCATCGAGTCTAAGAAGTCCACTGAGGCTCCAGAGGCTGAGAAGCGT
ATTGACCAGATCACCTCCGCCACCACCACAAGTGCTCGTCGTACACGCCT
TCGTTCCAAGGCGAAATTGGGAGCAGCTGCAGCTGGAGGAGCAGCCGTAG
CAGCTGGAGGAACTGCTCTCGTGGCCAGTGGATCTTCACTAAAGGGCAAG
AAGACTAAGGTGGACGATGGAACGCCAAAGATTGTGTGCTACTACACCAA
CTGGTCGCAGTACCGTGTCAAGATTGGCAAGTTCGTTCCGGAGGACATTC
CAGCCGATCTCTGCACCCACATTATCTTCGCTTTCGGATGGCTGAAGAAG
AACAAGCTGAGTTCTTATGAGTCCAACGATGAGACCAAGGATAATGTCCC
CGGACTGTACGAACGTATGATGACCCTCAAAAAGGCCAATCCTAAATTAA
AGATTCTTCTAGCTCTTGGAGGCTGGTCCTTTGGCACCCAGAAATTCAAG
GACATGTCCTCCACGCGATACACCCGCCAGACCTTTGTCTACTCGGCCAT
TCCTTTCCTGCGCAAGCGCGGCTTCGATGGTCTGGATATGGATTGGGAAT
ACCCCAAGGGTTCCGATGACAAGAAGAACTTCGTTCTGCTGCTGAAGGAA
CTGCGCGAAGCCTTTGAAGCTGAGCCCAGGAACTGAAGAAGCCCCGTCTC
TTGCTTTCCGCCGCCGTGCCAGTGGGTCCCGACATATCCGTGGTGGATAT
GATGTGCCTGCCATCGCCAGTTATCTGGATTTATCATCTGATGGCCTACG
ATTTCCACGGAAAGTGGGACGCGAGACTGGACACAATGCCCCACTTTATG
CTCCCTCATCGATCGGAGTGGCGCAACAACTGTCCGTGACAATGCCGCCA
GTTTATGGTTAGATGGGCGCCTCCAAGGAAACTGTCATAATGCGAACTAT
GACCTCCCTCCTTGGCTATCCGGAAACCATG
FMO09523.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:38:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cht7-RA | 3953 | CG1869-RA | 283..1364 | 9..1079 | 5090 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:38:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3094378..3094886 | 602..94 | 2545 | 100 | Minus |
| 3L | 28110227 | 3L | 3093828..3094317 | 1079..601 | 1875 | 96.9 | Minus |
| 3L | 28110227 | 3L | 3097663..3097745 | 93..11 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:38:46 has no hits.
FMO09523.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:33 Download gff for
FMO09523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht7-RA | 281..1362 | 9..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:39:12 Download gff for
FMO09523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht7-RA | 283..1364 | 9..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:38 Download gff for
FMO09523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht7-RA | 283..1364 | 9..1079 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:38 Download gff for
FMO09523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3094378..3094886 | 94..602 | 100 | <- | Minus |
| 3L | 3097663..3097752 | 1..93 | 95 | | Minus |
| 3L | 3093824..3094315 | 603..1082 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:39:12 Download gff for
FMO09523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3093824..3094315 | 603..1082 | 96 | <- | Minus |
| arm_3L | 3094378..3094886 | 94..602 | 100 | <- | Minus |
| arm_3L | 3097663..3097752 | 1..93 | 95 | | Minus |
