FMO09524.5prime Sequence
1133 bp (986 high quality bases) assembled on 2010-10-13
> FMO09524.5prime
CAGTCGACATGTCCCTGGCCGACATGGGCACAGCCTCTCGATCCGCCGGC
GGAGAAGGTGGTAGACACTATGATCTAGCCACGGGCGGAGCTGGAAGTGG
GGGTCATCCAGTGGGCGGCGGTCTGCCCGGAGGCCGCATGACGCACTCCC
TCAGCACTCCTTCCGGGGTGGATGGCACGCCCTCCACACCCCGACATCGC
GGCGGCAAAAAGCTGACTGTTCGCATCCAGATGCTGGACGACTCGATCAC
CATGTTCCAAGTACAGGCTAAAGCACTGGGCCGCGTGCTGTTTGAACAGG
TATGCCGTCAGCTGAATTTACTGGAGGCCGACTACTTCGGCTTGGAGTAC
CAGGAAGTCTCCACACATACCAAATACTGGCTGGATCTGGAGAAGCCAAT
GAACCGCCAGGTGGGCCTCTCTCTTATCGATCCAGTGCTGCGCTTCTGCA
TCAAGTTCTATACACCCGATCCAGCGCAATTGGAAGAGGAGTACACCAGG
TATTTGTTCTGCTTGCAAATCAAACGAGACCTGGCCACAGGCAGTCTGCA
GTGCAACGATAACACGGCGGCCTTAATGGCAAGCTACATTGTACAGGCGT
CATGCGGCGACTTCGTTCCGGAGGATTATCCCGACCATACTTATCTGTCC
TCGTATCGCTTTGTGCCCAACCAGGACGCCACCATGCAGCGAAAGATTAT
GGAGAACCACAAAAAGCATGTTGGTCAATCCCCGGCGGAGGCGGACCTTA
ACCTCTTGGAGACGGCTCGGAGGTGTGAGCTGTATGGCATGAAAATGCAT
CCGGCGAACGATGTGGAAAGGGGTGCCGCTTAATCTGGCTGTGGCCCACA
TGGGCATCACAGTCTTCCAGACATCACGCGGATCAACACCTTCTCGTGGG
CTAAGATACGCAAGATTTCTTTCAAGCGCAAGCGATTCCTGTCAAACTGC
ATCCAGAGGGATATGGATATTACAAGGAATACCGTGGAGTTCTTCTTCGA
GGGTCCCAACGAGTGCCAAAACTTCTGGAAAAATGCGTCGAAAATCACGG
ATTCTTCGATGCACTGCGTACAAAATACGCCCAAGGCCAAACTTCCGTTC
CCCTCCCGGGGGGTAATTCATTCGCCTATTAAC
FMO09524.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:38:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdep-RG | 15976 | CG44193-RG | 1012..2127 | 9..1123 | 5185 | 98 | Plus |
| Cdep-RC | 2537 | CG44193-RC | 1012..2127 | 9..1123 | 5185 | 98 | Plus |
| Cdep-RE | 5038 | CG44193-RE | 1012..2127 | 9..1123 | 5185 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:38:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4917874..4918132 | 9..267 | 1295 | 100 | Plus |
| 3R | 32079331 | 3R | 4922590..4922826 | 265..501 | 1185 | 100 | Plus |
| 3R | 32079331 | 3R | 4922945..4923168 | 498..721 | 1120 | 100 | Plus |
| 3R | 32079331 | 3R | 4923234..4923478 | 722..965 | 1050 | 98 | Plus |
| 3R | 32079331 | 3R | 4923532..4923652 | 965..1083 | 380 | 95.1 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:38:49 has no hits.
FMO09524.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:34 Download gff for
FMO09524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdep-RC | 994..2089 | 9..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:39:14 Download gff for
FMO09524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdep-RE | 1012..2107 | 9..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:39 Download gff for
FMO09524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdep-RE | 1012..2107 | 9..1100 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:39 Download gff for
FMO09524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4917874..4918131 | 9..266 | 100 | -> | Plus |
| 3R | 4922592..4922824 | 267..499 | 100 | -> | Plus |
| 3R | 4922947..4923168 | 500..721 | 100 | -> | Plus |
| 3R | 4923234..4923477 | 722..964 | 97 | -> | Plus |
| 3R | 4923532..4923666 | 965..1097 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:39:14 Download gff for
FMO09524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 743596..743853 | 9..266 | 100 | -> | Plus |
| arm_3R | 748314..748546 | 267..499 | 100 | -> | Plus |
| arm_3R | 748669..748890 | 500..721 | 100 | -> | Plus |
| arm_3R | 748956..749199 | 722..964 | 97 | -> | Plus |
| arm_3R | 749254..749388 | 965..1097 | 91 | -> | Plus |
