Clone FMO09525 Report

Search the DGRC for FMO09525

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:95
Well:25
Vector:pMK33-CFH-BD
Associated Gene/Transcriptgig-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO09525.5prime Sequence

1131 bp (1030 high quality bases) assembled on 2010-10-13

> FMO09525.5prime
CAGTCGACATGAACTCCAAGGACAAGTCCAAGTTCAAGTTGTTCCTCAAA
TCGCTGCCGGCAGGTTACGTGGGCGAGCGGACCCTGCGGCCGGAGTTTGA
GAGGGAACTGCGTCCGGAGCAGCCGGTGGCCCAGCGCTGCCGGATGCTGA
AAGAGCTGGGCGACACGCAGCTGCACAACTTCAATCTGGACGAGTCCGCC
ATCACCATTCTGTTCAATCTCACCAACGATCTCATCGTGCCCAACAAGCC
GGCAGAAACGCGGCAGATTGCCTTGAGCTTCTATAAACGGCTCATTCACA
CACAGTACAAGAACCTGACCATCATGCGGGAGAAGTTCTTCCTGGTCATC
CAGAACCACGAAGCCCGCGAAGATCTGCGTCACCTTCTTGAGCTGCTCGA
CACCCTCACCGACAATGGGAAGGATATCACAAACTTCGAGGAGAAGATTG
GCAAGTTTATGCTGCTCTGGATCCCAGCCATTACGGAGGCCAATCTGCTT
ACCCCCTACCTTGACATTCTGGTCAACCTGATCAAGTTCAATGCGGCGCA
TCTGGACAAAGACATCCTTGTGGGCATCGTGCAGAACGCTTGCGATCTGA
GCTGTAGCGTTACCGTAAACGAAATCGGTCTGCAGTGCCTCACAATTCTG
GAGATGGTCATCGGGTACACCATCTTCCCAAGCGAACCGCTGCCGCAGTG
CATCACCACCTTGTGCCGGACTGTGAATCATGCTCCTTACTGCCCGTCTT
CTTTCAAGATCATGAAGAACCTCTTGGGCACCCAGTTGGGATACCATTCC
ATGAAGATGATGTGCAGTATCCTCAACGATCGAGCTCTTTACGATGATGC
CCACCTGTTGCGTGGGGCCGTGTTCCATCTAAACATGAACATCTTTGGCT
CGAACATTATTTTCCAGGTTTCGCCTATGACCTATGCAACGAATGTGCTG
ACAGCCTTCTGCGGGCACTAGACAGTCGTCAGGTGATCGTGACCTTCGAG
TCATCTCAGGCGTTCGCATGGGTGATTACCAGCGCAGCTTTAAAGAATCA
TTTGGGGATCTGAATCTGGCATATATGTCCTCGAATCGTTAGCAATATTC
CAGATATACGAAAGGTCAATATATGCACAGG

FMO09525.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
gig-RB 5786 CG6975-RB 128..1244 8..1123 5125 98 Plus
gig-RA 5795 CG6975-RA 128..1244 8..1123 5125 98 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20129619..20129878 193..452 1285 99.6 Plus
3L 28110227 3L 20133501..20133703 757..959 1015 100 Plus
3L 28110227 3L 20130126..20130300 584..758 875 100 Plus
3L 28110227 3L 20129930..20130069 445..584 700 100 Plus
3L 28110227 3L 20129422..20129555 61..194 670 100 Plus
3L 28110227 3L 20129308..20129365 8..65 290 100 Plus
3L 28110227 3L 20133763..20133821 964..1021 185 91.5 Plus
Blast to na_te.dros performed on 2014-11-26 14:46:41 has no hits.

FMO09525.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:45 Download gff for FMO09525.5prime
Subject Subject Range Query Range Percent Splice Strand
gig-RA 124..1142 1..1021 99 == Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:43:07 Download gff for FMO09525.5prime
Subject Subject Range Query Range Percent Splice Strand
gig-RA 125..1143 1..1021 99 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:20 Download gff for FMO09525.5prime
Subject Subject Range Query Range Percent Splice Strand
gig-RA 125..1143 1..1021 99 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:20 Download gff for FMO09525.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20130126..20130300 584..758 100 -> Plus
3L 20133503..20133709 759..964 99 -> Plus
3L 20133764..20133821 965..1021 94 == Plus
3L 20129932..20130068 447..583 100 -> Plus
3L 20129305..20129363 1..63 93 -> Plus
3L 20129425..20129555 64..194 100 -> Plus
3L 20129621..20129872 195..446 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:43:07 Download gff for FMO09525.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20122405..20122463 1..63 93 -> Plus
arm_3L 20122525..20122655 64..194 100 -> Plus
arm_3L 20122721..20122972 195..446 100 -> Plus
arm_3L 20123032..20123168 447..583 100 -> Plus
arm_3L 20123226..20123400 584..758 100 -> Plus
arm_3L 20126603..20126809 759..964 99 -> Plus
arm_3L 20126864..20126921 965..1021 94 == Plus