FMO09525.5prime Sequence
1131 bp (1030 high quality bases) assembled on 2010-10-13
> FMO09525.5prime
CAGTCGACATGAACTCCAAGGACAAGTCCAAGTTCAAGTTGTTCCTCAAA
TCGCTGCCGGCAGGTTACGTGGGCGAGCGGACCCTGCGGCCGGAGTTTGA
GAGGGAACTGCGTCCGGAGCAGCCGGTGGCCCAGCGCTGCCGGATGCTGA
AAGAGCTGGGCGACACGCAGCTGCACAACTTCAATCTGGACGAGTCCGCC
ATCACCATTCTGTTCAATCTCACCAACGATCTCATCGTGCCCAACAAGCC
GGCAGAAACGCGGCAGATTGCCTTGAGCTTCTATAAACGGCTCATTCACA
CACAGTACAAGAACCTGACCATCATGCGGGAGAAGTTCTTCCTGGTCATC
CAGAACCACGAAGCCCGCGAAGATCTGCGTCACCTTCTTGAGCTGCTCGA
CACCCTCACCGACAATGGGAAGGATATCACAAACTTCGAGGAGAAGATTG
GCAAGTTTATGCTGCTCTGGATCCCAGCCATTACGGAGGCCAATCTGCTT
ACCCCCTACCTTGACATTCTGGTCAACCTGATCAAGTTCAATGCGGCGCA
TCTGGACAAAGACATCCTTGTGGGCATCGTGCAGAACGCTTGCGATCTGA
GCTGTAGCGTTACCGTAAACGAAATCGGTCTGCAGTGCCTCACAATTCTG
GAGATGGTCATCGGGTACACCATCTTCCCAAGCGAACCGCTGCCGCAGTG
CATCACCACCTTGTGCCGGACTGTGAATCATGCTCCTTACTGCCCGTCTT
CTTTCAAGATCATGAAGAACCTCTTGGGCACCCAGTTGGGATACCATTCC
ATGAAGATGATGTGCAGTATCCTCAACGATCGAGCTCTTTACGATGATGC
CCACCTGTTGCGTGGGGCCGTGTTCCATCTAAACATGAACATCTTTGGCT
CGAACATTATTTTCCAGGTTTCGCCTATGACCTATGCAACGAATGTGCTG
ACAGCCTTCTGCGGGCACTAGACAGTCGTCAGGTGATCGTGACCTTCGAG
TCATCTCAGGCGTTCGCATGGGTGATTACCAGCGCAGCTTTAAAGAATCA
TTTGGGGATCTGAATCTGGCATATATGTCCTCGAATCGTTAGCAATATTC
CAGATATACGAAAGGTCAATATATGCACAGG
FMO09525.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:46:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gig-RB | 5786 | CG6975-RB | 128..1244 | 8..1123 | 5125 | 98 | Plus |
gig-RA | 5795 | CG6975-RA | 128..1244 | 8..1123 | 5125 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:46:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20129619..20129878 | 193..452 | 1285 | 99.6 | Plus |
3L | 28110227 | 3L | 20133501..20133703 | 757..959 | 1015 | 100 | Plus |
3L | 28110227 | 3L | 20130126..20130300 | 584..758 | 875 | 100 | Plus |
3L | 28110227 | 3L | 20129930..20130069 | 445..584 | 700 | 100 | Plus |
3L | 28110227 | 3L | 20129422..20129555 | 61..194 | 670 | 100 | Plus |
3L | 28110227 | 3L | 20129308..20129365 | 8..65 | 290 | 100 | Plus |
3L | 28110227 | 3L | 20133763..20133821 | 964..1021 | 185 | 91.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:46:41 has no hits.
FMO09525.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:45 Download gff for
FMO09525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gig-RA | 124..1142 | 1..1021 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:43:07 Download gff for
FMO09525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gig-RA | 125..1143 | 1..1021 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:20 Download gff for
FMO09525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gig-RA | 125..1143 | 1..1021 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:20 Download gff for
FMO09525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20130126..20130300 | 584..758 | 100 | -> | Plus |
3L | 20133503..20133709 | 759..964 | 99 | -> | Plus |
3L | 20133764..20133821 | 965..1021 | 94 | == | Plus |
3L | 20129932..20130068 | 447..583 | 100 | -> | Plus |
3L | 20129305..20129363 | 1..63 | 93 | -> | Plus |
3L | 20129425..20129555 | 64..194 | 100 | -> | Plus |
3L | 20129621..20129872 | 195..446 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:43:07 Download gff for
FMO09525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20122405..20122463 | 1..63 | 93 | -> | Plus |
arm_3L | 20122525..20122655 | 64..194 | 100 | -> | Plus |
arm_3L | 20122721..20122972 | 195..446 | 100 | -> | Plus |
arm_3L | 20123032..20123168 | 447..583 | 100 | -> | Plus |
arm_3L | 20123226..20123400 | 584..758 | 100 | -> | Plus |
arm_3L | 20126603..20126809 | 759..964 | 99 | -> | Plus |
arm_3L | 20126864..20126921 | 965..1021 | 94 | == | Plus |