FMO09526.5prime Sequence
1119 bp (1014 high quality bases) assembled on 2010-10-13
> FMO09526.5prime
CAGTCGACATGGAGGTGACATTCAGCTCGGGCGGATCATCGAACGCCTCC
AGCGAGTGCGCCATAGACGGCGGCACGAATCGCTGTCGCGGCTTGGAGCC
CAACAATGGAACCTGCATCCTCAGCCAGGAGGTAAAGGATCTTTACAGAT
CCCTCTACACCGCCTCCAAGCAACTGGACGATGCCAAGAGGAATGTGCAG
TCGGTGGGACAGCTGTTCCAGCACGAAATCGAAGAGAAACGCTCGCTCCT
AGTGCAGCTGTGCAAGCAGATCATCTTCAAGGACTACCAGTCGGTGGGCA
AGAAGGTGCGCGAGGTGATGTGGCGACGTGGATACTACGAGTTCATTGCC
TTCGTGAAGAAGAACTGGCACAAGCAGTGCCAGGATGCGGCCACGGCCCA
AGAGAACATGCAAAAGCTGGAGCGATTCCTCTGCGCTGGCATCTTCAACT
ACAAACGATTGTCGGCACGCATGGAAGAGATCTATGATCTGGATCTAAAG
TATTTGATTGATTTCTCCATAATCAGTGATGGCTACATAAGCGACATGAT
CGGAGACACCATGGAGTCATCGCACTCGGGCACCCACGCGGTGGACAAGA
GTCTGGAGGCCGTGTCCTTTGCACTCGACACCATACACTCATCGCTGCTC
AGTCTGGGCGATCTTCATCGCTACTTTCTAGACTTTCGCATCGACAGCAA
ACTAAGCATAAGCAAGGAGCAGGTGGCCAAGTATTATCTGGAGGCCTTCA
AGCTTAATCCGGCCATTGGCATGGCCCAGAACCAGTTGGGTACACTGCAC
TACGGACAGAATCATGACCTGCACTCCACTTACCACTACTTGTACTCCCT
TGTGTGCATCATACCATTCGAACTAAGCGAAAATAATCTTAACAAGCTGT
TCGCCAAGCACACCGAATACCTAGAGCGTATGGATCCAGAAAACTAGACT
TCAACATCGAGGACTTCTTTGCCCGTTTCTATCTGATGGTGAAATATTTT
TTCTTCGACAAGGAAGTGCCGGGACTTTACGCCCTCTGGTGCCACTGGTG
GTGCTGATGATCCTACGCAGATTCTGTGTTCAGACAGCTGGCCGATCGAC
AGCATCTTCAGAATTGTTC
FMO09526.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:46:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Smg5-RC | 4102 | CG8954-RC | 116..1182 | 9..1078 | 5005 | 98.4 | Plus |
| Smg5-RB | 4809 | CG8954-RB | 282..1348 | 9..1078 | 5005 | 98.4 | Plus |
| Smg5-RA | 4021 | CG8954-RA | 276..1342 | 9..1078 | 5005 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:46:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13902843..13903722 | 1022..144 | 4245 | 99.1 | Minus |
| 2L | 23513712 | 2L | 13903781..13903920 | 148..9 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:46:45 has no hits.
FMO09526.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:45 Download gff for
FMO09526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smg5-RB | 156..1201 | 1..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:43:09 Download gff for
FMO09526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smg5-RA | 267..1312 | 1..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:22 Download gff for
FMO09526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Smg5-RA | 267..1312 | 1..1047 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:22 Download gff for
FMO09526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13902821..13903717 | 149..1047 | 98 | <- | Minus |
| 2L | 13903781..13903928 | 1..148 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:43:09 Download gff for
FMO09526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13902821..13903717 | 149..1047 | 98 | <- | Minus |
| arm_2L | 13903781..13903928 | 1..148 | 97 | | Minus |
