FMO09527.5prime Sequence
1132 bp (1032 high quality bases) assembled on 2010-10-13
> FMO09527.5prime
CAGTCGACATGGATACCTTCAATGTACCTATGCTGGCGGAGAGCAGCAAC
ACCAACTATGCAACAGAAGCTACCAGCAATCATCACCACCTGCAACATCA
GCATCAGCAGCAACATTCACATCAGCAGCAGCAGCAGCAGCAACTCCTAA
TGCCCCATCATCACAAGGATCAAATGCTGGCGGCGGGCAGTTCGCCCATG
CTGCCATTCTATTCACACTTGCAGTTGCAACAGAAGGATGCAACTGCAAC
AATAGGACCTGCAGCAGCAGCAGCAGCAGTTGAGGCGGCAACAACATCGG
CAAATGCCGATAACTTCAGTTCATTGCAAACGATCGATGCCAGTCAACTG
GATGGAGGCATCTCCTTGAGCGGCTTGTGCGATCGTTTCTTTGTGGCCAG
TCCAAATCCCCACAGCAATAGCAACATGACACTAATGGGCACTGCCACAG
CTGCAACAACTACCACTACCAACAACAACAATAATAACAACACTAACAAT
AACAATAACAACAACGTGGAGGCTAAGACAGTGAGGCCATCGAACGGCAA
TTCGGTGATCATCGAATCTGTGACGATGCCATCGTTTGCCAATATTCTAT
TTCCCACCCATCGCAGCGCCAACGAGTGCATTGATCCCGCCCTGTTGCAA
AAGAATCCCCAAAATCCAAATGGCAACAACAGTAGCATAATTGTGCCGCC
CGTCGAATATCATCAATTGAAACCACTTGAAGTCAATTCGTCGACTTCCG
TTTCCACCAGCAACTTCCTGTCCTCCACAACGGCCCAATTGTTGGACTTT
GAGGTGCAGGTGGGCAAGGATGATGGCCACATTAGCACCACTACGACCAC
AGGGCCGGGCTCTGGATCGGCATCGGGTTCAGGATCGGGATCTGGGATCG
GGATCAGGATCGATTGCACGCACAATAGGCACTGCAACGCCCACAACGAC
ACATCCATGAGCAACACTGCCAATCCGACGAGGAGCTCATTGCAACAGTT
ATTGAGGAGCTGGCCGCCAGTTTCTGGTGCCCCGAGAGCAAGCGTCTCCA
ACAGCAACCACCTAAGCAGTGCAGCACCACTCCGCAGCAGCAGCAGCACC
AGCAGCATCCAATGCCAAGCCGCCACCACAGT
FMO09527.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:46:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ftz-f1-RB | 5407 | CG4059-RB | 1327..2448 | 9..1132 | 5285 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:46:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18797610..18798731 | 1132..9 | 5085 | 98.4 | Minus |
Blast to na_te.dros performed 2014-11-26 14:46:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2684 | 123..499 | 205 | 56.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3283..3354 | 239..310 | 135 | 65.3 | Plus |
FMO09527.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:46 Download gff for
FMO09527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ftz-f1-RB | 1..1122 | 9..1132 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:43:12 Download gff for
FMO09527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ftz-f1-RB | 1321..2448 | 1..1132 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:25 Download gff for
FMO09527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ftz-f1-RB | 1321..2448 | 1..1132 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:25 Download gff for
FMO09527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18797610..18798737 | 1..1132 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:43:12 Download gff for
FMO09527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18790710..18791837 | 1..1132 | 98 | | Minus |
