FMO09528.5prime Sequence
1130 bp (1038 high quality bases) assembled on 2010-10-13
> FMO09528.5prime
CAGTCGACATGCAGGAGAAGTGGTTACTGCCCGCACTTTCGCTGGCGCTC
CTATTGGGCACCTGCTCGGCGCTCTACGAAGACCAGATCAAAAAGTTCGA
CTGGCGAGGCGTCAATGTGGGAGCACTGAAGCAGTCTCGCGTCGACCTCA
ACCATTTTCAGCCGCGGATTCTGGTCACCACCTATGAGGGAGTGGTGGCC
AGTCTGTGCGTAAAGACCGGCGAATTGGTGTGGCGGCAGGTGCTCGAGCA
GAAGCCGCGCGGCGACGTCAAGCTGCTCCAGGTGAGCGGATTCGCCGATG
ACAGCAGCGACACGGCCGCCGCTCCGATGGGCAGCAACATGGGCTTCGAC
ATGCTCACCGTTCAGGGACACGCTCCTGCTTTGGTGCGCGGCTGGAACAC
CAATATGGGTGCCCTTGAGTGGGAGTGGTCCATCATGCCCATGAACACGG
AGCGGGCCCAGGACGCCATGTGGATCTACAGCAAATCCGTGCTATATCAC
GTGCTGCCTGCCTGGCGGAGCCACCTCGAGGTGACGGCGTATTTCGCCAG
CTCGGGCCACAGCACTGGCAGCACCAGCAAGGTAATAGCTCCTTGGATCA
CCTCAGAGAGCTGCACCCTTAGCGGCACCTTCTACGTTTGTACGGACGGA
AAGCAGTTGATTAGTTTGGATCTCGTTTCCAAAAGCGGTCAAGTAATCCG
TACTTCGCTCGAGGCGGAGCCGAAGGGAAAAACTCAGGCCTTGACGGGTC
TGAGTGGTGTTGTGATTGTGGATGGGAAGCCAATTAGTGTCAACAAGGAC
CAATCGATCTGCGGTGATCTGCGAAGCTCCAGCTTCGCCGTGGGCAGCTT
TAACTATCGCAAAGTCTTGGCCTATGCAGATCTGTCCTCTGGAATCCTCA
GGATCAATGCTCTGTATTTGGATAACTGTGCACCGGCAGCGGAGTTGGAG
CAGAGTCTGCCATTTCCCCGAGCATTTTGGCACTCCGTCGCTGAGCAACT
TCGACTGTAAGCAGAAGCCGCAATGGCGGAGGGCAAGAACTTGTCTTGTT
TTTTGTTTAGCAGCACCCTCGGAGTTCATCTGCATGCAGCATGGACGCGT
CCGTGGTCCGCGCGAGATCCTGGCAATGAT
FMO09528.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:46:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2943-RD | 3051 | CG2943-RD | 138..1245 | 5..1116 | 5235 | 98.7 | Plus |
| CG2943-RC | 3271 | CG2943-RC | 138..1245 | 5..1116 | 5235 | 98.7 | Plus |
| CG2943-RB | 3292 | CG2943-RB | 138..1245 | 5..1116 | 5235 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:46:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7906417..7907061 | 747..103 | 3225 | 100 | Minus |
| 3R | 32079331 | 3R | 7906181..7906328 | 893..746 | 725 | 99.3 | Minus |
| 3R | 32079331 | 3R | 7905879..7906097 | 1116..894 | 595 | 92.5 | Minus |
| 3R | 32079331 | 3R | 7907123..7907226 | 108..5 | 505 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:46:52 has no hits.
FMO09528.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:46 Download gff for
FMO09528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2943-RA | 137..1248 | 1..1116 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:43:13 Download gff for
FMO09528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2943-RB | 134..1245 | 1..1116 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:26 Download gff for
FMO09528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2943-RB | 134..1245 | 1..1116 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:26 Download gff for
FMO09528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7905879..7906097 | 894..1116 | 93 | <- | Minus |
| 3R | 7906181..7906327 | 747..893 | 99 | <- | Minus |
| 3R | 7906418..7907060 | 104..746 | 100 | <- | Minus |
| 3R | 7907128..7907230 | 1..103 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:43:13 Download gff for
FMO09528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3731601..3731819 | 894..1116 | 93 | <- | Minus |
| arm_3R | 3731903..3732049 | 747..893 | 99 | <- | Minus |
| arm_3R | 3732140..3732782 | 104..746 | 100 | <- | Minus |
| arm_3R | 3732850..3732952 | 1..103 | 98 | | Minus |
