FMO09529.5prime Sequence
1127 bp (1045 high quality bases) assembled on 2010-10-13
> FMO09529.5prime
CAGTCGACATGCCGACCTTCGGCAGTAAGTTGCTCGCCTGCCTGCTGCTC
AGCTCGGTGATCCTGGTCAGCGGACAGTTCGAGCACTATCTGGACAGCCT
GCGCGCCTCGGAATTGTACGAGTTCGAGGATGGCTCCCTGGGCAGCATAC
ACCTCTTGCCCAAGGGCGACAGCGAAACGATCGTGCTGCAACTGGAGCAG
CCCATTCACTTCTACGGGGAGCAGTACGAGCAGCTCTATATCAACACCAA
TGGCATCCTCACCTTCAACTCCGAGTTTCCCGAGTACCTGAACCAGCCCT
TTCCGCTGGAATATGCTTCGATAGCGGCCTTCTACTCGAACGTGGACACC
TCGTTCAGTGATGAGGGCACCTCGATCTCCCTGTTCGAGTCCAAGGAACA
AAGTATTCTCGACAGGGCCTCCAGTTTGGTGCGTTACGCCTTTAGCAGCC
AGTCTGAATTCGAGGCTCGTCAGGTGATCGTGGCCACGTGGCGCAATGTG
GGCTACTTTGACTCCAAGACGGACCGTCTGAACACCTTCCAGGTGGCACT
GATTGCCAACGAGCAGAGCACGTTTGTGCAATTCATCTATCCGGATGGCG
GTCTTAACTGGTTGCAGGGCGAAACAGCTGGACTTGGTCTCCCCGACATT
CGTGCCCAGGCGGGTTTCGTGGCTGAAGATGGACGCTTCTACACCTTGAA
CGGTTCCGGATCGGAGAATGCCCGTTTCCTGAGCGAAAGCACCAACCTGG
GTGTTCCCGGAGTCTGGCTGTTCGAAGTGGCTCCCATTGAGAACGAGCAG
AACGTGAGGTCTCCCGACAATGCCGAGTCCCTCACAGAGTCCCCCGCTTT
GGCTCTGAGTTGCCAGGCCCACGCCCATCAGTGCCACGAGAAGGCCGAGT
GCCACGACAAAGCCGAAGGATATTGCTGTGTCTGCGGATCTGGATTCTAT
GGCAATGGAAAGTCCTGCCTGGCTAATGATCACCTATTCCGAGTGACAGG
ACACTGACCGGAGAGCTAAACAGGCAGCCAGTCAGGCGAGGAGCCAGCCT
GCAGTCGTATGTGGGTGACTAGCGAGCCGCACTATACAACATCATCCCTG
AACTCCGGACTGGGGCCCAGCCTCGAA
FMO09529.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:46:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ndg-RC | 4816 | CG12908-RC | 384..1503 | 9..1121 | 5180 | 98.2 | Plus |
| Ndg-RA | 4612 | CG12908-RA | 384..1503 | 9..1121 | 5180 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:46:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10316395..10316881 | 234..720 | 2420 | 99.8 | Plus |
| 2R | 25286936 | 2R | 10316976..10317331 | 720..1075 | 1505 | 96.1 | Plus |
| 2R | 25286936 | 2R | 10314274..10314504 | 9..239 | 1155 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:46:55 has no hits.
FMO09529.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:47 Download gff for
FMO09529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndg-RB | 349..1441 | 1..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:43:16 Download gff for
FMO09529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndg-RA | 376..1468 | 1..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:28 Download gff for
FMO09529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndg-RA | 376..1468 | 1..1090 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:28 Download gff for
FMO09529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10314266..10314504 | 1..239 | 98 | -> | Plus |
| 2R | 10316401..10316880 | 240..719 | 100 | -> | Plus |
| 2R | 10316976..10317349 | 720..1090 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:43:16 Download gff for
FMO09529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6201771..6202009 | 1..239 | 98 | -> | Plus |
| arm_2R | 6203906..6204385 | 240..719 | 100 | -> | Plus |
| arm_2R | 6204481..6204854 | 720..1090 | 96 | | Plus |
