FMO09530.5prime Sequence
1136 bp (1034 high quality bases) assembled on 2010-10-13
> FMO09530.5prime
CAGTCGACATGAGTCGCCACAGCCAACTGAAGCTAGCGATGCCCTCGGTT
CACGGAGCTCCAGCCACCGCTCCTGGCTCGCCGATGAACGCCAAAGCCCG
GAGCGTGAAGCTCGGACTGGGTGTTAATCAGCGGACAGGTCGTGTGCAGT
GGTGTCCCGGTCTGACCTGCTGCAAAATGCTTCTACTTCTTCCAGTGGTA
ATGCTGCCACTGACCCTGGTGCTCATCCTGATCATGCGGCTGGACGGGAT
GCTGGCGGCGCTGCAATTGAACGAACAGAGGATGAGGGATCTGCGGAACT
CTCACAGCGAGGTGCCTGTCTATATGGAGGATTACGAAGCCCTTTTACCG
GAGGGTAGTACCTACAACGACCTGATCAACGAGGAGTTCATACTGCCGGC
GAGCAAGCGGACCCAACTGCAGATTTTGGCCGCGGAGAGGGCGCGTCGCT
GCCAACCATATCGCTACGGGAACGGGGAGTCCATGGAGTTGGAGGAGCGC
AACACGCTGATGAAGGACTCCCGAACCTCCTTCCTGCCACTGGGCATTCC
GCGAGAGTGCCTCGGCAGCGGCATTGAACTGGACATTAAACCCATAGATG
AGGAGGCCTACCAGAGGCAGAAGAAGCGCTACCAGGACATAGCTCCGTAT
TGGCTGGAGAAGATCAGAATACGGGAGCGCCGCGAGGCCGAACGTCATGC
AGAGGAGGCCAGTGCCGAGATCAGCGAGGCCACCGCCGCTCTGCAGAGTT
TCTGGAACGAGGAAGGCACTCGGGAGGGCATTCGCATGACCCAGGCCAAA
ACCATGAAGCGCTACATGGATAACAAAGTGGATCCCTGCGTGGATTTCTA
CAAGTACGCCTGCGGCAACTGGGAGCGCCTGCATCCAATACCCAAGGATA
AGCCGGCTTCGATACCTTCGAAATGCTGCGTGAGAGTCTGGACCTGGTGC
TACGAAATCTTCTGGAGAAAAATACCCCTGTGCCCTCCGCAGCGGAGCTA
CGAAAAAGTCCCGTGCGATACTCCTATTTAGCTTAATGAGCAAGGCGAGG
GGTGAGGGCGAAGCTGAACAGCCGGGCGGACTACGGCGGAACGCCTGGCG
TTCGGCCCCATTGTCAGTAAAAGGCATTGCTTAACC
FMO09530.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:47:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nep4-RA | 3632 | CG4058-RA | 204..1332 | 9..1136 | 5270 | 98.3 | Plus |
| Nep4-RC | 3629 | CG4058-RC | 388..1329 | 196..1136 | 4335 | 98 | Plus |
| Nep4-RB | 3331 | CG4058-RB | 90..1031 | 196..1136 | 4335 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:46:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20655548..20656639 | 1097..9 | 5085 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:46:59 has no hits.
FMO09530.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:48 Download gff for
FMO09530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nep4-RA | 196..1330 | 1..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:43:18 Download gff for
FMO09530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nep4-RA | 198..1332 | 1..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:30 Download gff for
FMO09530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nep4-RA | 198..1332 | 1..1136 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:30 Download gff for
FMO09530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20655511..20656645 | 1..1136 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:43:18 Download gff for
FMO09530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16481233..16482367 | 1..1136 | 97 | | Minus |
