Clone FMO09533 Report

Search the DGRC for FMO09533

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:95
Well:33
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO09533.5prime Sequence

801 bp (801 high quality bases) assembled on 2010-10-13

> FMO09533.5prime
CAGTCGACATGAGAGTTATGAGAGAGAAAGACCACTCACCAAGAAAGATG
CTTCCTAGCCCGAAACAGGGCTGCGTATACCCTGCCTTAGGATTAATACC
CACATCGTATATATCACACGTACCTTATGATCTGGCCTCCTCAGCGTCGG
TGGCGGCCACATCCTCGTCATCAACGTCGCCGACGACGACGTCGGCAACG
ACAACTGGGCGGCTGCAGCACCAACACTCCCACCAGCAACACCAGACCTT
AAATCACCATGCCAAGGGCAAGCGGAGAAGCAGTTTCGATCAGCCGTTGG
ATCTGCGGTTGGCACACAAGCGGAAAACGGACCTGGTGGATCAAGGACCC
ATGGAGGATGAGAACAGCAACCTGATCATGTTCGCCAGTGAACTGGCGGT
GGCTCAGCAAAAGGAGAAGGAGCTGAACAACAACCATATCGCAGCATCGC
TGGCCGACCTGGGCTTTGATATGAGCCGCAAAATGCTGAGGGCCTTGAGA
GAGGGTGGTGCAGGTGGCGGTGGCGGAGGAGGAGGAGGAGGAGGAGGCGG
TGGTGGACCACCCAACGCACCGCCCTTAACACCACCGCAATGTTCGATAC
CTGCCGTACATCCCACACTCCTAGAAGCCATGACCAAGAACTTGCCCTTG
CAGTATCGCAATGTGTTCGCTGGGGTTTTGCCGGGCAATGTGAACAGTCC
GGCGGCCTCCAGTTAGTCCAACGGGCGCGGATTTTGCGTTCCGGGCATCC
GCTCAAGAAATGCTAGCTCACCTGGCCACCGCCCACAGAGCATTTGCAAC
T

FMO09533.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10348-RB 2611 CG10348-RB 765..1555 9..801 3840 99.1 Plus
CG10348-RC 3878 CG10348-RC 1870..2660 9..801 3840 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18715671..18716461 801..9 3790 99.1 Minus
Blast to na_te.dros performed 2014-11-26 14:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6892 154..271 146 60.5 Plus

FMO09533.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:29 Download gff for FMO09533.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10348-RA 1..752 48..801 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:38:58 Download gff for FMO09533.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10348-RC 1862..2660 1..801 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:27 Download gff for FMO09533.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10348-RC 1862..2660 1..801 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:27 Download gff for FMO09533.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18715671..18716467 1..801 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:38:58 Download gff for FMO09533.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18715671..18716467 1..801 98   Minus