FMO09535.5prime Sequence
1133 bp (1030 high quality bases) assembled on 2010-10-13
> FMO09535.5prime
CAGTCGACATGTCCTTCGCGGCTATGGCGAATACCAACACAGAAAAACTT
TACATGCAACTAAGCGCATCGGAATTATCAGCAATTATTATGAAAGATTC
ACCCAATTCCAACGACCGTGATGCGGGTTTTTGTTCCGCCAGTTCGGAAA
GCGAAGGCGGAGACGACTTGGTCGTCGAGCACGCGCGCAGTGGCAGTCCC
GACATCAGACCAAAAGGAACAGACTCGGCGGACTCCAAGCCAATAGCCCT
TGTCCGCAACAAACGCAAGAGTTCGGAACCCTTCAAAGTCGTAGGTTTGA
CGACTCCCAACTCTAAATCCATGCCTGGTCCTCCGTCCAGTGCGAGTATG
AATGCAACTGGTCCGCTAAAGAAACGCATACGATACACATCTTCCGCCGA
TTCGGCAGTTGTCCTAACGCCACCAGCCATAGACTCTCCACCGCCCAACA
GTTGCATACCTTCCACGTTGCGCCTGCAGCATGAAATAATGCCTAATCCG
GCACATATATATGTTCGCCATCCGGGAGTTACGACTCTTCACAGATCGCT
TGCTGCCCACCCAGAACAGCTGGAACCACTCGCATTAGTAACGACCAAAA
AGCAATGTGTCGACCAAGCGGGGCCTAAAATAGAGGCCTTTTCCGCATTG
CTAATTGGAAAACAGCCATCCGCCAAAAAAACGTTGAAGGAAAGGACGCA
AAAAGAATCAACGTCATCTTCCTTTTTAGAAGCTAGTCTTAGCGATGAGG
ATCTGAACAAGACGGGATTGGCACCAATTTCGCGACCTCATCAACATCAA
CGCAATTACAAGAATATGACTAGGGAGCGCCGCATTGAGGCGAACGCACG
TGAACGGACCCGTGTACACACCATATCCGCCGCCTACGAAACGCTCCGCC
AAGCTGTTCCAGCCTATGCCAGCACTCAAAACTTTCCAACTCCCCGTTCT
TCGGGTAGCGTGTTCCTATATACTAGCCTTAAGTAGATGGCTGGCCGAGG
ATTACAGCGCCGATCATCCGTACCGTTCATTGCCACGTGCTAGAGCTGTA
CATCACCATCCAAACGAGTAAGGTGAAACGAAGAAAGACGAGCCAGCCTT
TCTAGAACATCGTTGGGCCCGCGGCAGTATGTC
FMO09535.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:46:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| net-RC | 1662 | CG11450-RC | 281..1375 | 9..1092 | 5090 | 98.4 | Plus |
| net-RB | 2225 | CG11450-RB | 281..1375 | 9..1092 | 5090 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:46:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 83330..84279 | 1041..95 | 4465 | 98.7 | Minus |
| 2L | 23513712 | 2L | 87020..87107 | 96..9 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:46:33 has no hits.
FMO09535.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:44 Download gff for
FMO09535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| net-RB | 271..1370 | 1..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:43:03 Download gff for
FMO09535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| net-RB | 276..1375 | 1..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:18 Download gff for
FMO09535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| net-RB | 276..1375 | 1..1092 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:18 Download gff for
FMO09535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 83271..84277 | 97..1092 | 98 | <- | Minus |
| 2L | 87020..87112 | 1..96 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:43:03 Download gff for
FMO09535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 83271..84277 | 97..1092 | 98 | <- | Minus |
| arm_2L | 87020..87112 | 1..96 | 95 | | Minus |
