Clone FMO09536 Report

Search the DGRC for FMO09536

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:95
Well:36
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO09536.5prime Sequence

473 bp (473 high quality bases) assembled on 2010-10-13

> FMO09536.5prime
CAGTCGACATGAAAGCAAGCTTATTTGAAGCTAAAATCGAACGTCTGGGG
CGTTCAGATTACGGACTTTCGGCCATCTTAGAGTGGAAATATGACACGAA
TGAGGAAACGATGGTTGAGGCACAAGCGTATCGCAGTAATTCGGGCGATG
AGAGTGATTACAAGCTGCTACCCTGGGCAATACCCAAACAGCCCTTCTAT
GATTACATCAACACCTACTATAAGGATGTGATCTCAAAAAACCTCGGCTA
CTGCTCCAATCTACCCAAATACGAAGATAAATTTCAGCCTCCCTGGCCAA
AGAACACCTATAAGCTTGACAAGTGCAAAATCGGTGGTGATGGATTGCCG
GAAATCGCTCCGCCAGGATTCTACAAGATCGTATTCACTAAATTTGGTCC
TGGGCAGCCAACTTGGGGTTTCACAGCCGTTTTTAAGCTGACTAACAAAA
TTTTCGCAAGCTTTCTAGACCAT

FMO09536.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG18536-RA 788 CG18536-RA 277..725 9..455 2205 99.6 Plus
CG18537-RA 607 CG18537-RA 207..358 81..232 265 78.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18295253..18295595 113..455 1715 100 Plus
2R 25286936 2R 18295091..18295199 9..115 480 98.2 Plus
2R 25286936 2R 18296307..18296407 132..232 205 80.2 Plus
Blast to na_te.dros performed on 2014-11-26 14:46:37 has no hits.

FMO09536.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:44 Download gff for FMO09536.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18536-RA 271..725 1..455 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:43:06 Download gff for FMO09536.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18536-RA 271..725 1..455 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:19 Download gff for FMO09536.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18536-RA 271..725 1..455 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:19 Download gff for FMO09536.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18295254..18295595 114..455 100   Plus
2R 18295085..18295197 1..113 94 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:43:06 Download gff for FMO09536.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14182590..14182702 1..113 94 -> Plus
arm_2R 14182759..14183100 114..455 100   Plus