FMO09537.5prime Sequence
455 bp (455 high quality bases) assembled on 2010-10-13
> FMO09537.5prime
CAGTCGACATGTCGTTTAATATCATGCAAAAGCTGACCATGCAGTGCCTG
AAGGCAGACCAGCCGCTGATGACCACCGTGCGCAATGCCAGCAAGAAAAC
CGGCGGAAGTACGAGGAATAAGAAGGGCCATGCGAGGCCCAAACATCGCG
GATGGCGCGTCCAGGATGGGCACCACGTCTCCGAGGGCACAATACTGGCC
ACCCAGCTCACAACGCGCTTTCATCCGGGCCTGAATGTGGGCTTTGGCCG
CAATGGAACCCTTTTCGCCATGGAGCACGGCAAGGTTTATGTGACCTGCG
AGGCCATCGATCCCAACTGGGACCACACCTGGATTCAGCGGAACTACGCC
GGTCGCCAGGGCCAGAACATCTACAAGAAGTTCTTCAATGTTGTGCCCGA
AAATCAGCATCAGCGATTTCGTCTAGTGGAGGAAATCGCAAGCTTTCTAG
ACCAT
FMO09537.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:37:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL27-RC | 547 | CG33002-RC | 92..520 | 9..437 | 2145 | 100 | Plus |
| mRpL27-RB | 896 | CG33002-RB | 56..484 | 9..437 | 2145 | 100 | Plus |
| mRpL27-RA | 511 | CG33002-RA | 56..484 | 9..437 | 2145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:37:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4459007..4459207 | 437..237 | 1005 | 100 | Minus |
| 2L | 23513712 | 2L | 4459263..4459429 | 239..73 | 835 | 100 | Minus |
| 2L | 23513712 | 2L | 4459484..4459547 | 72..9 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:37:55 has no hits.
FMO09537.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:25 Download gff for
FMO09537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL27-RA | 1..417 | 24..438 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:38:43 Download gff for
FMO09537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL27-RA | 56..490 | 9..445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:14 Download gff for
FMO09537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL27-RA | 56..490 | 9..445 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:14 Download gff for
FMO09537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4459001..4459207 | 237..445 | 98 | <- | Minus |
| 2L | 4459266..4459429 | 73..236 | 100 | <- | Minus |
| 2L | 4459484..4459547 | 9..72 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:38:43 Download gff for
FMO09537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4459001..4459207 | 237..445 | 98 | <- | Minus |
| arm_2L | 4459266..4459429 | 73..236 | 100 | <- | Minus |
| arm_2L | 4459484..4459547 | 9..72 | 100 | | Minus |
