FMO09539.5prime Sequence
1137 bp (1015 high quality bases) assembled on 2010-10-13
> FMO09539.5prime
CAGTCGACATGGGTTCGTTATTAAAGGAGCTCGTATGCCAGATAAAAGAA
ATACAGTCCGATTTGAAGAATGACACCCATGTAGGTGCGACTAACGGGGA
ATGGAGCCGAAAAGAAGTTCGCAAAATGAAGATTTGTTTAGGGAAGGTAA
TTCTTTTCACAAGGTCCTTGAGGGAGACATTTGCGGAAAGTCAAGAGTCC
GGGAATCAAGAACAATCCTCGAAGGCTTTAGTTCTGTTACGATGTACTCG
GTACATTAAGCGCTTGTCTATGGTCCTGACACTACTTGAGACTGAAGAAG
GCTTAAATAAAGTGAATAAAACGCTCTTCCAACTGGACGTTGATACAATT
CTTTTTGAACTGGAGTGTATTGTCAAGGAGGCCTTGAAATCTCTTTCAGT
GTCGCGATTCCCGTACCAAGAGTCATCTTGTACCACTACAGAAACTTTAG
TAAAAGAAAGTCCCATTTGTGAGTTGAATAAATTGCGGCTAATGTTGAAA
AATGAGAAGAAAAAGCAGGAGCTAGAAATAATGGGCCACAATTTAATCAT
AATGAAGGAGAAAACTTTGGTTCTTCAGGCCCGTAAAAATCAAAGGGCAG
CGGAAAATAGACTAGCTGAGAAGCAGGATCGCATCAAGGCACTCGAAGAA
TGTCTAGCCAACTGCAAGTTTCAGTTGAAGAACGTCAACGAACAGTATCA
GAAATTGAAGAAAGCCAGCAATCAATTAATAAGGGAAAGTAATCAGATTA
GGCCACAGAAAAGTTGGAGTGTGCTAGTAGGGCGGAGAAAAGGCAGAATA
TCGACTAGGACCAGTTTTGTATGGAAGTCGCTTAAGCTAGATCAATCGGA
ACGGGAAACTCTTATGGGTCTAAAGAAGCGCCTTAGTGAGGAAAAGAAAT
TAAGTTGAGAGCCAGACTGAAATGAGTAAATCAGAAAGGCCATGGACGAG
CTGTGTCTTGGTAAAGGAGGACTTCATTTGGATTACAAAATAAGAGTGAA
CAGATGCCAGTAGAATACCTTGGTTGTCATTGATAAAGCTGATGCTCTTT
CCCATACAACAACGCTTAAGTCGATGCACTCATGGACCGCCTATGGATTC
TTTATGCAGCTAACTCGATCGAATATGGATCCGAAAA
FMO09539.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:38:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Actn3-RA | 1856 | CG8953-RA | 59..1129 | 8..1069 | 5065 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:38:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16976645..16977446 | 1039..244 | 3680 | 99 | Minus |
| 3R | 32079331 | 3R | 16977499..16977737 | 246..8 | 1195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:38:02 has no hits.
FMO09539.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:26 Download gff for
FMO09539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actn3-RA | 1..994 | 85..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:38:47 Download gff for
FMO09539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actn3-RA | 52..1129 | 1..1069 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:17 Download gff for
FMO09539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actn3-RA | 52..1129 | 1..1069 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:17 Download gff for
FMO09539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16976612..16977446 | 244..1069 | 98 | <- | Minus |
| 3R | 16977502..16977744 | 1..243 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:38:47 Download gff for
FMO09539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12802334..12803168 | 244..1069 | 98 | <- | Minus |
| arm_3R | 12803224..12803466 | 1..243 | 98 | | Minus |
