Clone FMO09540 Report

Search the DGRC for FMO09540

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:95
Well:40
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO09540.5prime Sequence

1112 bp (1007 high quality bases) assembled on 2010-10-13

> FMO09540.5prime
CAGTCGACATGATGGGAGTACGACCGAATCGAAAACGTTTGGAGCTGATG
CTAATGTTGCTGATCGGTCTGGCATGGGGAATACTTCTGTCCGAGCTGAT
GAAACGAACTCGCTGGCAGAATCATGCGGATCGGCTGAAGGAGGAGAGCA
GTCCCTTTCCGAGCAGCCAGCGGAGCAGGAACCTACGCACCCCACCCACC
ATTGCTCCTTCGACCACGAATCCACCGCCGGACATCCTGGCCGCGCGACT
CTTCAACGAGACGCGTGTCCTGTGCATGGTGCTGACCAGTCCAAAGACGC
ACCACACCCGCGCCATTCACATCAAACGCACCTGGGGAAGGCGCTGCAAC
AAGCTGATCTTCATGAGCACCAAGGCGGACAAGGAACTGGGATCCGTGGC
GCTCAATGTGAGGGAGGGCTACTCCAATTTGTGGCCCAAGACCCGGGCGG
CGCTGCAGTACGTCTATAAGCACCATTTCCAGAAGTACGACTGGTTCCTC
AAAGCGGACGATGACACCTATTTTATCATGGAGAACCTGCGCGCCTTTCT
ACACGCCCACAATTTCAGGGAACCGGTTTATTTTGGAAACAAGTTCCGCC
AGCATGTAAAAGAGGGATACATGTCTGGAGGAGCTGGTTATGTGCTGAGT
AAAATGGCCCTCCATCGGCTGATTAAACTGGGTTTCAGCAACAGCAGCAT
TTGCACCAATCGCAATTATGGCTACGAGGATGTGGAACTGGGACGATGTC
TGGCCGGTGTGGGCGTCGTGGGTGGTGATTCCCGGGATGAGCAGGGGTTA
AGTCGCTTCATTCCTTTCTCCCCACTTCACTGGTATCCCCAGCCACCGGA
TTGGTACCAGCCACTACTCTACTACACATCCCCAGATAACTCCAGTGACT
GCTGCTCAATACGGCCATCTCGTTTCACTACACAACGCACAGGAGTTCTA
CGTGCTCGATATTATCATCTACAAGCTACGAATTTTTGGCATAACAGAGA
ACTGGTTCCACTGCCCAAAAAAGAAGCCAGTTCTAGCCAATGTCGATAAT
TACGAACCACCAAAGAGAAACGCCAATGCTCTCATTAAATGATGCAGAAA
AACGTCCTAACC

FMO09540.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG2975-RA 1884 CG2975-RA 524..1631 9..1102 5045 97.9 Plus
CG34056-RA 1303 CG34056-RA 412..475 328..391 185 85.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2840994..2841502 9..517 2545 100 Plus
2L 23513712 2L 2841820..2842094 613..887 1375 100 Plus
2L 23513712 2L 2842157..2842320 888..1047 500 92.7 Plus
2L 23513712 2L 2841563..2841664 518..619 495 99 Plus
3L 28110227 3L 896362..896425 328..391 185 85.9 Plus
Blast to na_te.dros performed on 2014-11-26 14:38:06 has no hits.

FMO09540.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:26 Download gff for FMO09540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2975-RA 517..1640 1..1109 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:38:49 Download gff for FMO09540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2975-RA 517..1640 1..1109 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:19 Download gff for FMO09540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2975-RA 517..1640 1..1109 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:19 Download gff for FMO09540.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2841822..2842094 615..887 100 -> Plus
2L 2840987..2841502 1..517 99 -> Plus
2L 2841563..2841659 518..614 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:38:49 Download gff for FMO09540.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2840987..2841502 1..517 99 -> Plus
arm_2L 2841563..2841659 518..614 100 -> Plus
arm_2L 2841822..2842094 615..887 100 -> Plus