FMO09540.5prime Sequence
1112 bp (1007 high quality bases) assembled on 2010-10-13
> FMO09540.5prime
CAGTCGACATGATGGGAGTACGACCGAATCGAAAACGTTTGGAGCTGATG
CTAATGTTGCTGATCGGTCTGGCATGGGGAATACTTCTGTCCGAGCTGAT
GAAACGAACTCGCTGGCAGAATCATGCGGATCGGCTGAAGGAGGAGAGCA
GTCCCTTTCCGAGCAGCCAGCGGAGCAGGAACCTACGCACCCCACCCACC
ATTGCTCCTTCGACCACGAATCCACCGCCGGACATCCTGGCCGCGCGACT
CTTCAACGAGACGCGTGTCCTGTGCATGGTGCTGACCAGTCCAAAGACGC
ACCACACCCGCGCCATTCACATCAAACGCACCTGGGGAAGGCGCTGCAAC
AAGCTGATCTTCATGAGCACCAAGGCGGACAAGGAACTGGGATCCGTGGC
GCTCAATGTGAGGGAGGGCTACTCCAATTTGTGGCCCAAGACCCGGGCGG
CGCTGCAGTACGTCTATAAGCACCATTTCCAGAAGTACGACTGGTTCCTC
AAAGCGGACGATGACACCTATTTTATCATGGAGAACCTGCGCGCCTTTCT
ACACGCCCACAATTTCAGGGAACCGGTTTATTTTGGAAACAAGTTCCGCC
AGCATGTAAAAGAGGGATACATGTCTGGAGGAGCTGGTTATGTGCTGAGT
AAAATGGCCCTCCATCGGCTGATTAAACTGGGTTTCAGCAACAGCAGCAT
TTGCACCAATCGCAATTATGGCTACGAGGATGTGGAACTGGGACGATGTC
TGGCCGGTGTGGGCGTCGTGGGTGGTGATTCCCGGGATGAGCAGGGGTTA
AGTCGCTTCATTCCTTTCTCCCCACTTCACTGGTATCCCCAGCCACCGGA
TTGGTACCAGCCACTACTCTACTACACATCCCCAGATAACTCCAGTGACT
GCTGCTCAATACGGCCATCTCGTTTCACTACACAACGCACAGGAGTTCTA
CGTGCTCGATATTATCATCTACAAGCTACGAATTTTTGGCATAACAGAGA
ACTGGTTCCACTGCCCAAAAAAGAAGCCAGTTCTAGCCAATGTCGATAAT
TACGAACCACCAAAGAGAAACGCCAATGCTCTCATTAAATGATGCAGAAA
AACGTCCTAACC
FMO09540.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:38:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2975-RA | 1884 | CG2975-RA | 524..1631 | 9..1102 | 5045 | 97.9 | Plus |
CG34056-RA | 1303 | CG34056-RA | 412..475 | 328..391 | 185 | 85.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:38:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2840994..2841502 | 9..517 | 2545 | 100 | Plus |
2L | 23513712 | 2L | 2841820..2842094 | 613..887 | 1375 | 100 | Plus |
2L | 23513712 | 2L | 2842157..2842320 | 888..1047 | 500 | 92.7 | Plus |
2L | 23513712 | 2L | 2841563..2841664 | 518..619 | 495 | 99 | Plus |
3L | 28110227 | 3L | 896362..896425 | 328..391 | 185 | 85.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:38:06 has no hits.
FMO09540.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:26 Download gff for
FMO09540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2975-RA | 517..1640 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:38:49 Download gff for
FMO09540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2975-RA | 517..1640 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:19 Download gff for
FMO09540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2975-RA | 517..1640 | 1..1109 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:19 Download gff for
FMO09540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2841822..2842094 | 615..887 | 100 | -> | Plus |
2L | 2840987..2841502 | 1..517 | 99 | -> | Plus |
2L | 2841563..2841659 | 518..614 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:38:49 Download gff for
FMO09540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2840987..2841502 | 1..517 | 99 | -> | Plus |
arm_2L | 2841563..2841659 | 518..614 | 100 | -> | Plus |
arm_2L | 2841822..2842094 | 615..887 | 100 | -> | Plus |