FMO09541.5prime Sequence
1118 bp (1022 high quality bases) assembled on 2010-10-13
> FMO09541.5prime
CAGTCGACATGCCGAAAGGTTTGGCCAAAATGCTAAGACACCTGCCGCTA
ATCTCGCTGCTGCTGTTCGCACCTACTGTGTTGGCCTACTTCGAGGGCTG
TGATAACACCTTCAACCTCAGTCCGGGGACCACCTACGTTGAGTCGCCCT
ACTACCCCAACAATTATCCTGGCGGCACTTCCTGTCGCTACAAGTTCACC
GCTCCCCTGGACTACTACATACAAGTGCAATGTTCCCTGGGAATTCCAAA
GGGCAATGGTCAGTGCACCACGGATAACTTTTGGCTCGACACAGAGGGTG
ATCTTCTGATGCGCGGTGCCGAGAACTTCTGTGGCTCCGGAACCCTTTCA
CGGGAGTCCCTGTTCACGGAGCTGGTTTTCGCCTACATCTCCACCGGCAC
GAAGGGAGGAAGCTTTAAGTGCACCCTGACCACCGTCAAACAGAACTGTA
ATTGTGGCTGGTCGGCCACGACGCGGATTGCCAATGGCCAACAGGCGGCA
GCCAACGAGTTTCCCAGCATGGCGGCCCTCAAGGATGTGACCAAGAACCA
GGCGTCCTTCTGTGGCGGAACCATAGTGGCCCATCGTTATATTTTAACTG
CTGCCCATTGTATTTACCAAGTTAGCAGGGCCACGAATATTGTGGCTATT
GTGGGAACCAATGACCTGGGAAATCCTTCCAGTTCCAGGTACTACCAGCA
GTATAATATTCAGCAGATGATACCACATGAGCAGTATGTTAGCGACCCCG
ACGTAAACAATGATATCGCAGTTTTGATAACCGCCAGCAATATTCAGTGG
TCCCGAGGCGTGGGACCCATTTGTCTGCCTCCCGTAGAACGAGCACACCA
TTCACTTACGACCTCGTCGACGTGATTGGCTATGGCACGGTCTTCTTTGC
CGGACCCACGTCCACAAGTCTGCAGAAGATCAATCTGAATGTGGTCACCA
ACCAGGACTGCCAGACGGAGTACAACATGTGCCACGAATATACACTGGGC
AATGTGCCCTATGACTACTTCGGCACAGGTCGCGACTCCTGCAGTTGACT
CCGGTGCCAGTCATCTGCGGAAGTCAGCAGTTCTTTGTTCGATCATCAGC
TACGAAAGAGCTGGGCTG
FMO09541.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:38:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30371-RA | 1258 | CG30371-RA | 6..1128 | 9..1118 | 5165 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:38:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8268693..8269019 | 576..250 | 1635 | 100 | Minus |
| 2R | 25286936 | 2R | 8269086..8269329 | 252..9 | 1220 | 100 | Minus |
| 2R | 25286936 | 2R | 8268124..8268285 | 837..676 | 810 | 100 | Minus |
| 2R | 25286936 | 2R | 8267858..8268062 | 1042..841 | 770 | 95.1 | Minus |
| 2R | 25286936 | 2R | 8268373..8268473 | 675..575 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:38:10 has no hits.
FMO09541.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:27 Download gff for
FMO09541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30371-RA | 1..1102 | 30..1118 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:38:52 Download gff for
FMO09541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30371-RA | 1..1128 | 5..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:21 Download gff for
FMO09541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30371-RA | 1..1128 | 5..1118 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:21 Download gff for
FMO09541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8267773..8268062 | 841..1118 | 93 | <- | Minus |
| 2R | 8268120..8268285 | 676..840 | 99 | <- | Minus |
| 2R | 8268373..8268471 | 577..675 | 100 | <- | Minus |
| 2R | 8268693..8269017 | 252..576 | 100 | <- | Minus |
| 2R | 8269087..8269334 | 1..251 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:38:52 Download gff for
FMO09541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4156592..4156839 | 1..251 | 98 | | Minus |
| arm_2R | 4155278..4155567 | 841..1118 | 93 | <- | Minus |
| arm_2R | 4155625..4155790 | 676..840 | 99 | <- | Minus |
| arm_2R | 4155878..4155976 | 577..675 | 100 | <- | Minus |
| arm_2R | 4156198..4156522 | 252..576 | 100 | <- | Minus |
