FMO09542.5prime Sequence
1125 bp (1014 high quality bases) assembled on 2010-10-13
> FMO09542.5prime
CAGTCGACATGGCTCGGCCGAATCCAGGTGCACCCGTGATGAGAGGCGAT
GACATCTATTCGCGGGTGCACTCCGCCACCCCTCTGCCCCTGCCCCTACA
CCTGGTCCTCCTGCTCTTCCTGCTCGTGCTGCAGCTCCTGGCACCGGCTG
CAGCGACTCCCGTGAATCCCTGTCCCCACAAGGGCATGGCCGAACTGATT
CGCAACAGTCCGGTAATTGTCAAGGCCCTCGTCGCACGGATCTTCGCCGA
TGAGCCGGAGGGACCGGTGCAGTCCCTCGCACAGGACACGATTTTAATAA
CATTAACGCCGGAAACGATATACAAGGGTGCCTCGCTGCTGAAAGTGGCC
AACGGCAATACCGATGCCGGGAATCCCATGTCGCCGAGGGTGGGAGGTCT
CATGTCCTGGAGCTCGGGCCATCGCAGCAGAGGTGGCAGCGCTGGATCCG
CGGGCAGCGGTGGCACCTGGAGTGGCGCTGAGTCAGCCTTTCAGTACGAG
GGGCAGTTGAATGCGACCCTCCAGCCACTGCGTTGTTTCGATAATAACAT
GCTGAAAATGCTGCCGGCGGAGTTAATTGCCTTTGGCAAACTGCTGCCCG
CTGCGACGGCATCCACCGGAGGCAGTCCGCAGACCGCACGACAGCTTCAA
CGACCGCCCGTGGGTGGCGCCACCGATGTGCTGCAAGTCAGCGTCAACGG
TCTGCATCGCTGGACGCCGCAGTTCGAGAATCATATCTGGAAGCATTTGG
GCTGGGACGATTGGAGCGACTTCACCTTGTGCAGTGTCACCTGCGGTCAG
GGGGTGCAGCAGCGTTTCCGGCGCTGTCTACTCGACAATCCGCTGGTGGA
CATCAACATGAACATCAATCTGGAGGAGGACGACGACGACGACGACGAGG
ATGAACAGGCTCAGGGTGCAGACGATGCGGGCGCAGTTGCCCAACTGTCC
AAGGAAACGGACGTTTTCGCCGATGGCAACACGATCTGCTGGCAGATGAG
ATGAGACGAGCTGCTCCATAATGCGAGCAAGTGGCGACGAGTCATTGCAT
AAATTTGACCAGGCAACGGACGACAAATACGCCGCAGAACATGTCCTGTC
CCATGCCATCGACGCCCAGTCCCCG
FMO09542.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:47:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12594-RB | 3469 | CG12594-RB | 902..2003 | 8..1107 | 5250 | 98.8 | Plus |
| CG12594-RA | 3364 | CG12594-RA | 797..1898 | 8..1107 | 5250 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:47:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11727192..11727687 | 8..503 | 2480 | 100 | Plus |
| 3R | 32079331 | 3R | 11729282..11729621 | 750..1088 | 1400 | 97.4 | Plus |
| 3R | 32079331 | 3R | 11727784..11728033 | 502..751 | 1250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:47:03 has no hits.
FMO09542.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:48 Download gff for
FMO09542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12594-RA | 723..1828 | 1..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:43:19 Download gff for
FMO09542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12594-RA | 793..1898 | 1..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:32 Download gff for
FMO09542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12594-RA | 793..1898 | 1..1107 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:32 Download gff for
FMO09542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11727188..11727686 | 1..502 | 99 | -> | Plus |
| 3R | 11727785..11728032 | 503..750 | 100 | -> | Plus |
| 3R | 11729283..11729641 | 751..1107 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:43:19 Download gff for
FMO09542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7552910..7553408 | 1..502 | 99 | -> | Plus |
| arm_3R | 7553507..7553754 | 503..750 | 100 | -> | Plus |
| arm_3R | 7555005..7555363 | 751..1107 | 96 | | Plus |
