FMO09543.5prime Sequence
1061 bp (1019 high quality bases) assembled on 2010-10-13
> FMO09543.5prime
CAGTCGACATGGGAACTATGTCTCTAAGCGATTTCAAGGAGGTTAGAATA
CCGGCACCTTGGGGTCACATCTCCGGACGTTGGTATGGTAATCGAACGGA
GCGACCGATCCTGGCTATTCACGGATGGCTGGACAATCTGGGAACCTTCG
ATCGGCTGATTCCCCTGCTTCCCGACTACATAGGCGTGTTGTGCATCGAT
CTTCCCGGACATGGAAGATCCGCTCACATTCAGCCTGGAATGCACTACGC
CGTCAACGATTACGTGTTAATCATTCCTCGAGTGATGAAGGAATACGGCT
GGTCAAAGGTCTCATTGATGGGCCACTCATTGGGTGGCATCATTAGCTTC
GTTTACACATCTTTGGCACCAGATACAGTGGACATGGTCATCTCACTGGA
CATATTGCTGCCCTTGTCAAAGGACCCCAAAACGGTTATTAAATATTTGA
ACCACAGTTTGGATAAGCACCTGGTGGAAGAGGAACGTCAGGTGGAGGGA
AACCTGCACGAGCCTCCCTCCTACACCCTCGCACAGCTGACACAGGTCCT
CGCCAAAGGAAGTGACAACTCGGTGACGCCAGAGTTTGCCCAACACTTGC
TTCACCGGCAGGTGTCGAAGTCGCAACTCTATCCAGACAGATTCTTCTTC
TCCAGAGATGGGTCAGTTAAATACTACAGCCATTTGCAAATGGAACCCGA
ATTTGGTGAGGCGTTGGTGAAGCGAATTCGGAGAATACCCTGTTTGATCA
TTAAAGGGTCAAAGTCTGATTTTGTGGAAGCTAGAACCGAGAAGGCGGTT
GCCATCTTACGTCAAAACAATCCGCACTTCGAGTTCTACGAGGTGGAGGG
AGGTACCCACCACGTTCATCTTCATGCTGCCGAGGAGTGTGCCCGATACA
TAGTGCCCTTCATCCGACACACCGACCCCCGGCACTCACTTCTTGGTCCT
TGAGTGCCAAGGAGGAGCATCTAGTGCCGAGGAAAGCGGCGACAGTAAGA
AAGATTCTTTTAAAAGGAGCCCACCCCGCTTAGAGCAAGCTTGCAAGCTT
TCTAGAACCAT
FMO09543.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:47:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15879-RA | 1389 | CG15879-RA | 126..1164 | 4..1041 | 4900 | 98.4 | Plus |
| CG5704-RB | 1289 | CG5704-RB | 126..533 | 9..416 | 720 | 78.7 | Plus |
| CG5704-RA | 1220 | CG5704-RA | 126..533 | 9..416 | 720 | 78.7 | Plus |
| CG5704-RB | 1289 | CG5704-RB | 924..1033 | 819..927 | 240 | 81.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:47:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2167775..2168784 | 1041..33 | 4645 | 98.4 | Minus |
| 3L | 28110227 | 3L | 2173590..2173948 | 412..54 | 715 | 79.9 | Minus |
| 3L | 28110227 | 3L | 2170309..2170669 | 416..56 | 680 | 79.2 | Minus |
| 3L | 28110227 | 3L | 2172332..2172676 | 391..47 | 405 | 74.5 | Minus |
| 3L | 28110227 | 3L | 2169818..2169918 | 919..819 | 235 | 82.2 | Minus |
| 3L | 28110227 | 3L | 2173094..2173192 | 917..819 | 225 | 81.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:47:07 has no hits.
FMO09543.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:49 Download gff for
FMO09543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15879-RA | 1..1029 | 18..1045 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:43:22 Download gff for
FMO09543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15879-RA | 122..1164 | 1..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:33 Download gff for
FMO09543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15879-RA | 122..1164 | 1..1041 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:33 Download gff for
FMO09543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2167775..2168784 | 33..1041 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:43:22 Download gff for
FMO09543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2167775..2168784 | 33..1041 | 98 | <- | Minus |
