FMO09544.5prime Sequence
461 bp (461 high quality bases) assembled on 2010-10-13
> FMO09544.5prime
CAGTCGACATGATGGCTGATTTGGTGAGCGGTGAAGCTTCTGAATCCGAC
GAGGAGCTGCAGGAGAAGAATAAGATTTTTGCTGCTGAAATTTCGGGCGA
AGCCTCCGAAGAGGATGATGAAGACATTTACGAGCAAGGCCGAAGCAGCA
ACCAGGTCAACAGCACGGCTTCCATTTACCGGAATAATCTGCTTCAGCGG
AAACTAATCGAAAACAACATTGCCATTTGGAGATCCCTTACCGCTTTCAC
TCGCAGCTTTGTGTTGAGTGCATCAAAGCAGCTCGTAACCACTGATCAAA
TGCTCATCAAGTCGCAACATAGTCTTCAGTCGGCTCACACATCCCTGCAG
CAGGCCCAGAAGAACGCCCAGGACCTGCAAAACAGGGTGGCTGATGTTAT
TACCAGCAACTTCCTCCCGCACATAAGCATCCAGAAGGCAACCGCAAGCT
TTCTAGACCAT
FMO09544.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:47:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Blos3-RA | 564 | CG34255-RA | 82..516 | 9..443 | 2175 | 100 | Plus |
| Rad9-RA | 1779 | CG3945-RA | 1337..1471 | 376..242 | 675 | 100 | Minus |
| Rad9-RA | 1779 | CG3945-RA | 1471..1519 | 57..9 | 245 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:47:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18870614..18870849 | 208..443 | 1180 | 100 | Plus |
| 3L | 28110227 | 3L | 18870426..18870560 | 73..207 | 675 | 100 | Plus |
| 3L | 28110227 | 3L | 18870305..18870377 | 9..81 | 335 | 97.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:47:11 has no hits.
FMO09544.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:49 Download gff for
FMO09544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34255-RA | 46..492 | 1..451 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:43:23 Download gff for
FMO09544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blos3-RA | 76..522 | 1..451 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:34 Download gff for
FMO09544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Blos3-RA | 76..522 | 1..451 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:34 Download gff for
FMO09544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18870299..18870370 | 1..74 | 94 | -> | Plus |
| 3L | 18870428..18870560 | 75..207 | 100 | -> | Plus |
| 3L | 18870614..18870855 | 208..451 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:43:23 Download gff for
FMO09544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18863399..18863470 | 1..74 | 94 | -> | Plus |
| arm_3L | 18863528..18863660 | 75..207 | 100 | -> | Plus |
| arm_3L | 18863714..18863955 | 208..451 | 98 | | Plus |
