Clone FMO09546 Report

Search the DGRC for FMO09546

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:95
Well:46
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO09546.5prime Sequence

287 bp (287 high quality bases) assembled on 2010-10-13

> FMO09546.5prime
CAGTCGACATGTGGGGCTATCATTTGCCAATTGTGCTGCGCCCAGCCAAC
AATATGACCATCACGAGCGGAGGCAACAGCTACAGTCCTCGAAACTCCGT
GGAAAACGACGCCTGGACGCTTGGTGAATCCTCCGAGTATGGTGAATATC
CCGATGACTACGATGAAAACGATGAGGAGCACGGCGATGAGGATATTGAC
TACGTTGGCCAGGAATCCGACGATGTTTTCGAAACGGAATCTGGAGAGGC
TGCAGTTCAGGGCGCACAGGCAAGCTTTCTAGACCAT

FMO09546.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG42671-RJ 5900 CG42671-RJ 4478..4738 9..269 1305 100 Plus
CG42671-RH 4879 CG42671-RH 4334..4594 9..269 1305 100 Plus
CG42671-RG 4917 CG42671-RG 4372..4632 9..269 1305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11229113..11229350 32..269 1190 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:38:24 has no hits.

FMO09546.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:29 Download gff for FMO09546.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34240-RA 244..511 1..269 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:39:00 Download gff for FMO09546.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42671-RG 4365..4632 1..269 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:28 Download gff for FMO09546.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42671-RG 4365..4632 1..269 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:28 Download gff for FMO09546.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11229113..11229350 32..269 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:39:00 Download gff for FMO09546.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11222213..11222450 32..269 100   Plus